Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L23
         (1149 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       83   6e-18
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   1.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 82.6 bits (195), Expect = 6e-18
 Identities = 65/223 (29%), Positives = 102/223 (45%), Gaps = 12/223 (5%)
 Frame = +3

Query: 219 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 398
           V G  V      F    L+  +L  I   G++ P+ VQ   +P  + G D++  A++G G
Sbjct: 186 VSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSG 245

Query: 399 KTAVFVLATLQQL-EPSESHVYVLVMCH--------TRELAFQISKEYERFSKYMSGVRV 551
           KTA F +  +  L E S   V     C         TREL  QI ++  +FS   S ++ 
Sbjct: 246 KTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFS-LNSILKT 304

Query: 552 SVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESL 731
            V +GG  +      L   C HI+V TPGR+L                +LDE D+ML+  
Sbjct: 305 VVAYGGTSVMHQRGKLSAGC-HILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMG 363

Query: 732 DMRRDVQEIFRNT--PHG-KQVMMFSATLSKEIRPVCKKFMQD 851
            +    + +   T  P G +Q +MFSAT   E++ + ++F+ +
Sbjct: 364 FLPSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNN 406


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 200 FGRPVSXLLICLCFSXGVEKXVVVSHDXLXFDELVYXSG 84
           FGR     +  LC   G+     VSH     DE++  +G
Sbjct: 123 FGRVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNG 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,638
Number of Sequences: 438
Number of extensions: 5050
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38921823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)