Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_L22
(1141 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 227 4e-58
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 126 1e-27
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 95 3e-18
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 78 4e-13
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 77 8e-13
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 76 2e-12
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 62 2e-08
UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4... 60 1e-07
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 58 4e-07
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 56 2e-06
UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2... 54 9e-06
UniRef50_P03851 Cluster: Uncharacterized 9.4 kDa protein; n=11; ... 49 2e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 45 0.003
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 42 0.030
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.12
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 38 0.36
UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4; ... 35 4.5
UniRef50_A7SYZ9 Cluster: Predicted protein; n=1; Nematostella ve... 34 5.9
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 227 bits (555), Expect = 4e-58
Identities = 107/125 (85%), Positives = 110/125 (88%)
Frame = +3
Query: 603 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 782
SK+ T R RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61
Query: 783 CRLPDTCPPFSLREAWRFLIAHAVGISXRCRSXAPSWAVCTNPPFSPTAAPYPVXIV*VX 962
CRLPDTCPPFSLREAWRFLIAHAVGIS RCRS APSWAVCTNPPFSPTAAPYPV IV +
Sbjct: 62 CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIV-LS 120
Query: 963 PGKND 977
P + D
Sbjct: 121 PTRKD 125
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 126 bits (304), Expect = 1e-27
Identities = 73/120 (60%), Positives = 78/120 (65%)
Frame = +3
Query: 435 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQEXTCEQKASKRP 614
R +C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE 76
Query: 615 GTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 794
RPR RFSIGSAPLTSI K DAQ+ GGETRQDYKD RRFPL APSCALLF P LP
Sbjct: 77 ---IRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 95.1 bits (226), Expect = 3e-18
Identities = 45/54 (83%), Positives = 47/54 (87%)
Frame = +3
Query: 621 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 782
V+ PR RFSIGSAPLTSITK DAQ+ GGETRQDYKDTRRFPL APSCALLF P
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 78.2 bits (184), Expect = 4e-13
Identities = 40/74 (54%), Positives = 47/74 (63%)
Frame = -3
Query: 965 GXDSDDXYRIRXSGRAERGVXAHSPAWSXRPTPX*DTYSVSYEKAPRFPKGERRTGIR*A 786
G DD YR S RAERGV A+SPAWS RP P DT SVSYEKAPRFPKG++ +
Sbjct: 9 GWTQDDSYRKGRSSRAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQV--- 65
Query: 785 AGSEQESARGSFQG 744
+G Q R + +G
Sbjct: 66 SGKRQGRNRRAHEG 79
Score = 48.8 bits (111), Expect = 3e-04
Identities = 25/40 (62%), Positives = 27/40 (67%)
Frame = -1
Query: 814 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT 695
+K QVSGKRQGRNRRAHEGA+ K SL PPLT
Sbjct: 60 KKAEQVSGKRQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 77.0 bits (181), Expect = 8e-13
Identities = 42/85 (49%), Positives = 45/85 (52%)
Frame = +3
Query: 696 VRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISXRCR 875
VR GETRQD K P P PPFSL + + GIS RCR
Sbjct: 23 VRSGETRQDLKIITVSDESLPLALSCSNPAVSRIPVPPFSLAGSVALSHSSHSGISARCR 82
Query: 876 SXAPSWAVCTNPPFSPTAAPYPVXI 950
S APSWAV NPPFSPTAAPYPV +
Sbjct: 83 SFAPSWAVSKNPPFSPTAAPYPVTV 107
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 75.8 bits (178), Expect = 2e-12
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +2
Query: 761 VRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLXSV 871
+RSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYL SV
Sbjct: 1 MRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV 37
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 62.5 bits (145), Expect = 2e-08
Identities = 29/38 (76%), Positives = 29/38 (76%)
Frame = -3
Query: 611 PFAGLLLTCXFLRYPLILWITVLPPLSELIPLAAAERP 498
P LLTC F YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4;
Bacteria|Rep: Putative uncharacterized protein 1 -
Escherichia coli
Length = 42
Score = 59.7 bits (138), Expect = 1e-07
Identities = 26/33 (78%), Positives = 26/33 (78%)
Frame = -3
Query: 965 GXDSDDXYRIRXSGRAERGVXAHSPAWSXRPTP 867
G DD YRIR SGRAERGV AHSPAWS RPTP
Sbjct: 9 GWTQDDSYRIRRSGRAERGVRAHSPAWSERPTP 41
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 58.0 bits (134), Expect = 4e-07
Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 411 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 578
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 55.6 bits (128), Expect = 2e-06
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +3
Query: 510 CGERYQLTQRR*YG--YPQNQGITQEXTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITK 683
C R Q R G +P+N I + + + + P T F S PLT+ITK
Sbjct: 22 CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81
Query: 684 IDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 782
I Q + +T+ +YK T FPL++PS +LLF P
Sbjct: 82 IYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114
>UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2;
cellular organisms|Rep: Putative uncharacterized protein
1 - Escherichia coli
Length = 47
Score = 53.6 bits (123), Expect = 9e-06
Identities = 25/39 (64%), Positives = 27/39 (69%)
Frame = -3
Query: 971 FTGXDSDDXYRIRXSGRAERGVXAHSPAWSXRPTPX*DT 855
F G + YRIR S RAERGV A+SPAWS RPTP DT
Sbjct: 7 FPGWTQVNSYRIRRSSRAERGVLAYSPAWSERPTPSRDT 45
>UniRef50_P03851 Cluster: Uncharacterized 9.4 kDa protein; n=11;
cellular organisms|Rep: Uncharacterized 9.4 kDa protein -
Escherichia coli
Length = 84
Score = 49.2 bits (112), Expect = 2e-04
Identities = 27/60 (45%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 899 VHXPPVQPDRCXLSGXYRL--SPXR*KRLIAXXXXXXXXXXXXXXXXGATKFXXWXPNYG 1072
+H PPVQPDRC LSG YRL +P R L GAT+F W PNYG
Sbjct: 1 MHEPPVQPDRCALSGNYRLESNPVR-HDLSPLAAATGNRISRARYVGGATEFLKWWPNYG 59
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 45.2 bits (102), Expect = 0.003
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +1
Query: 214 DPDMIRYIDEFGQTTTRMQ 270
DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 41.9 bits (94), Expect = 0.030
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 530 HSKAVIRLSTESGDNAGXNM 589
HSKAVIRLSTESGDNAG NM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.12
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -1
Query: 481 ERGSGRAPNTQTASPRALADSLMQ 410
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 38.3 bits (85), Expect = 0.36
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 409 SALMNRPTXGERRFAYW 459
+ALMNRPT GERRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (strain 668)
Length = 755
Score = 34.7 bits (76), Expect = 4.5
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = -1
Query: 841 MRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 737
+R+R A RR GG+ G+R+GRNR+ + RG+R
Sbjct: 355 VRRRAAPRRRHGGEWRGRRRGRNRKRRQ--QRGQR 387
>UniRef50_A7SYZ9 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1107
Score = 34.3 bits (75), Expect = 5.9
Identities = 30/82 (36%), Positives = 35/82 (42%)
Frame = +3
Query: 696 VRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISXRCR 875
+RG T Q D R P +CA RP R D C ++ WR HAVG +
Sbjct: 638 LRGPATGQAVVDPGRMPRPV-TCA--GRPTRGLDLCGLATVSWVWRSTKCHAVG-----K 689
Query: 876 SXAPSWAVCTNPPFSPTAAPYP 941
PS CT P S APYP
Sbjct: 690 YSPPS--TCTRRPKSQRDAPYP 709
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 961,308,076
Number of Sequences: 1657284
Number of extensions: 18694648
Number of successful extensions: 48805
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 46109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48766
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 112626549911
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -