Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L20
         (1162 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual    69   1e-12
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.40 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   1.6  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   8.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   8.7  

>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
 Frame = +2

Query: 239 MXLITHNMLT---SKCLKGVVXGYPLAINAXXIKVKXVDFNPEFISRVIPKLDWEVLWVA 409
           M L+T N L     KC       +PL +    + ++ ++  PEF+  ++P++DW  L   
Sbjct: 1   MKLLTANFLNCSNKKCTSSP-EAFPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKT 59

Query: 410 ADSIGHSDGLPRSLENKYDENEE-FLKKAHKXXXXXXXXXGHLTCPESGRQFPISKGIPN 586
              +G+   LP    +  D+++E  LK  H          G + C   G  +PI +GIPN
Sbjct: 60  TRQLGNYS-LPDEKPDLVDDSDEVLLKSLHNVLLETEITEGKMVCGNCGHVYPIFEGIPN 118

Query: 587 MLLNEAEV 610
           MLL+E+E+
Sbjct: 119 MLLSESEI 126


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 347 FNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSL 451
           F  +FI  V+ +++WE+L +     G  +GL R+L
Sbjct: 100 FQEQFIENVVKEINWEILAILISLSGIENGLVRNL 134


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 23/75 (30%), Positives = 36/75 (48%)
 Frame = -2

Query: 609 TSASFNSILGIPLEIGNCLPDSGQVKCPSSTSTSNKTL*AFFKNSSFSSYLFSKDLGRPS 430
           +S+S +S   +     + L  S     PS +STS+ T  +    S+ SSYL S  +   S
Sbjct: 160 SSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSS 219

Query: 429 LWPMLSAATHNTSQS 385
             P  S+++  TS S
Sbjct: 220 SSPSSSSSSTLTSSS 234


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 810 SKLYCRNYKVMVHFLKYLI*NKFTCTIALLYIKN 709
           + L CR Y V+ HFL +L    +   + +L  K+
Sbjct: 127 NNLLCRYYGVLFHFLDFLTLRPYISNLLVLLTKH 160


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 18  SGLLSXPATPXSLHQNSTSPQISHSCTSSPSS 113
           S   S  +T  S+  +STS   S + TSSPSS
Sbjct: 582 SSTSSPSSTSLSISSSSTSSTFSSASTSSPSS 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,537
Number of Sequences: 5004
Number of extensions: 57625
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 621560784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)