Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L20
         (1162 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    26   0.73 
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    26   0.73 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    25   1.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   6.8  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   6.8  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   6.8  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.8 bits (54), Expect = 0.73
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 813 HSKLYCRNYKVMVHFLKYL 757
           + KLYC NYK + + + Y+
Sbjct: 96  YKKLYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.8 bits (54), Expect = 0.73
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 813 HSKLYCRNYKVMVHFLKYL 757
           + KLYC NYK + + + Y+
Sbjct: 96  YKKLYCNNYKKLYYNINYI 114


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 813 HSKLYCRNYKVMVHFLKYL 757
           + KLYC NY+ + + + Y+
Sbjct: 96  YKKLYCNNYRKLYYNINYI 114


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 245 LITHNMLTSKCLKGVVXGYPLAINA 319
           L+T ++ TSK +K V   + +A+NA
Sbjct: 160 LLTFDLKTSKLVKQVEIPHNIAVNA 184


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = -2

Query: 609 TSASFNSILGIPLEIGNCLPDSGQVKCPSSTSTSNKTL*AFFKNSSFSSYL--FSKDLGR 436
           T    N+ +   L+ G C PD+ ++K     +  N+      K    +  +  F  D  +
Sbjct: 39  TERLLNAYVNCLLDQGPCTPDAAELKRNLPDALENECSPCSEKQKKIADKVVQFLID-NK 97

Query: 435 PSLWPMLSA 409
           P +W +L A
Sbjct: 98  PEIWVLLEA 106


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = -2

Query: 609 TSASFNSILGIPLEIGNCLPDSGQVKCPSSTSTSNKTL*AFFKNSSFSSYL--FSKDLGR 436
           T    N+ +   L+ G C PD+ ++K     +  N+      K    +  +  F  D  +
Sbjct: 39  TERLLNAYVNCLLDQGPCTPDAAELKRNLPDALENECSPCSEKQKKIADKVVQFLID-NK 97

Query: 435 PSLWPMLSA 409
           P +W +L A
Sbjct: 98  PEIWVLLEA 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,541
Number of Sequences: 438
Number of extensions: 4768
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39403827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)