Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L19
         (1188 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    34   0.034
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    31   0.31 
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    30   0.72 
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.96 
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   1.7  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   3.9  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   6.8  
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    26   8.9  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    26   8.9  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   8.9  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 34.3 bits (75), Expect = 0.034
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
 Frame = +2

Query: 656 VVSQPWTAAQSGGTGIELCNVPGPSNRIYTEPCTS--SQTQVEPTRRSQAFDLDYDSVED 829
           VVS+  +   SG + I   +   PS+ I + P TS  S +   PT  S  F     ++  
Sbjct: 503 VVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISS 562

Query: 830 GVPTSSPESIVTPLSPVQYEPTTQSHRERSXRVRSPS 940
           G+ +SS  S  + +S +    +T S    S  + S S
Sbjct: 563 GISSSSIPSTFSSVSSI-LSSSTSSPSSTSLSISSSS 598


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
 Frame = +2

Query: 641  EFQDIVVS--QPWTAAQSGGTGIELCNVPGPSNRIYTEPCTSSQTQVEPTRRSQAFDLDY 814
            E  +I+ S  +P TA+ +GG          P+    TE    + T  EPT  +  F    
Sbjct: 816  ETTEIITSTIEPTTASGTGGGNPTAAPTNEPTVTTGTETTEGTATYTEPTTFTSTFSFT- 874

Query: 815  DSVEDGVPTSSPESIVTPLSPVQYEPTT 898
             ++  G  T  P +   P S V   PTT
Sbjct: 875  TTIIGGTTTIIPVNPGNPSSSVSAPPTT 902


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 580 LVAWHI*NILLISI*FAFHSGISGYCRFTALDCSTIW 690
           LV  HI  +LLI + + FH    G   F  +D S IW
Sbjct: 225 LVVHHIITLLLIGLSYYFHFTWIGLAVFITMDTSDIW 261


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 567 QVISVSRLAHLKYIVNFYLICLSFRNFRILSF 662
           Q+I    L H+ ++++F+ +  SF +F +LSF
Sbjct: 163 QIILSHSLFHISHLISFHFLFFSFLSFPLLSF 194


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 339 NSHXNGNTQTTEQWKKVWSXFKNNTKKQAERLRSKAN 449
           NSH  G T+ T+ WK+      +N  K    LRS  N
Sbjct: 268 NSHFFGPTKRTKSWKRATCQQLSNAVKAILHLRSSQN 304


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +3

Query: 552 GAGSFQVISV-SRLAHLKYIVNFYLICLSFRNFRILSFH-SPGLQHNLEVQVLNCVMCLD 725
           G  + +VI + +RL  L    NFYL+ + F   RIL  H  P +     + +  C +  D
Sbjct: 313 GIQTHEVIKLLARLFFLPSSANFYLLLIQFNTERILLPHEQPCIIFERLLSLFGCKVTSD 372

Query: 726 LPIEYTQNHA 755
             I    N++
Sbjct: 373 EEINEEDNYS 382


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 19/72 (26%), Positives = 28/72 (38%)
 Frame = +3

Query: 435  RSKANGADVXPAIYAKLSGLEXXVLNVMGMQAAMGSELDGAGSFQVISVSRLAHLKYIVN 614
            RSK  G  +    +     ++  V  V+G            G   +IS+ R AH      
Sbjct: 1511 RSKTYGVYLAGVAHFLFVCVDVVVFEVLGYLEGWSFSKTLLGFVAIISIHRFAH-----K 1565

Query: 615  FYLICLSFRNFR 650
            F++IC   R FR
Sbjct: 1566 FFIICFLSREFR 1577


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 743 TEPCTSSQTQVEPTRRSQAFDLDYDSVEDGVPTSSPESIVTPLSPV 880
           TEPC S+  +VE        D+D +     V T   ES   P + V
Sbjct: 92  TEPCISTGGKVEEKELKVNKDVDENEGHVAVETGKKESAAKPAASV 137


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 800 FDLDYDSVEDGVPTSSPESIVTPLSPVQYEPTTQSHRERSXRVR 931
           +D D+D++E  +PT SP +    ++   YE  T  H+  S R+R
Sbjct: 333 YDCDFDNIEWTLPTDSP-TTAPRIAKHTYE--TIYHQWHSLRIR 373


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 24/89 (26%), Positives = 37/89 (41%)
 Frame = +2

Query: 677 AAQSGGTGIELCNVPGPSNRIYTEPCTSSQTQVEPTRRSQAFDLDYDSVEDGVPTSSPES 856
           AA++ G  +E   V  P NR  T P    +T+  P+      +  +   E+G P SS   
Sbjct: 61  AAKAIGGIVENVPVWNP-NR--TSPVKKEETEDLPSFNGDTEEKPFIKTEEGAPASSQSQ 117

Query: 857 IVTPLSPVQYEPTTQSHRERSXRVRSPSQ 943
           +V   +       ++   ER    RS SQ
Sbjct: 118 VVVSSNLTSNSEVSKLEEER-LSTRSHSQ 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,639,665
Number of Sequences: 5004
Number of extensions: 69975
Number of successful extensions: 218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)