Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L19
         (1188 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0299 + 32956737-32957129,32957250-32957442,32957537-32958117     33   0.58 
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787...    31   1.3  
03_03_0208 + 15459260-15459922                                         31   1.3  
07_03_0749 + 21212463-21212911,21212976-21213305,21213336-212134...    31   2.3  
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544...    31   2.3  
03_02_0218 - 6522330-6522458,6523257-6523328,6523555-6523707,652...    31   2.3  
05_05_0337 - 24176184-24176858                                         30   3.1  
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115...    30   4.1  

>03_06_0299 + 32956737-32957129,32957250-32957442,32957537-32958117
          Length = 388

 Score = 32.7 bits (71), Expect = 0.58
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +2

Query: 743 TEPCTSSQTQVEPTRRSQAFDLDYDSVEDG-VPTSSPESIVTPLSPVQYEPTTQSHRERS 919
           T   +++ T V     S AF+L +D  + G +P +  E I   +SP  + PT ++ +++ 
Sbjct: 302 TSTTSATATPVSAASFSGAFELLFDRKQSGEIPAA--EKITVVVSPSPWRPTEEASKKKP 359

Query: 920 XRVRSPSQICARLTQAERA 976
               SP Q+  +  Q  +A
Sbjct: 360 PPSPSPPQLWQQHQQPPKA 378


>05_05_0230 -
           23476919-23477372,23477656-23477695,23478578-23478700,
           23479114-23479151,23479289-23479674,23479875-23481053,
           23481805-23481928,23482733-23482779
          Length = 796

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 755 TSSQTQVEPTRRSQAFDLDYDSVEDGVPTSSPESIV--TPLSPVQYEPTTQSHRERSXRV 928
           T +     PTR +++  +   S++  + +SS  + V  T +S V   PTT S R  +   
Sbjct: 63  TENGHSTAPTRPARSNSVTRPSIQSTLMSSSNRTAVLNTSISSVSSRPTTPSRRSSTVVA 122

Query: 929 RSPSQICARLTQAERAVPVK 988
              S   +R   A  + PVK
Sbjct: 123 PKQSIAASRPVPARSSTPVK 142


>03_03_0208 + 15459260-15459922
          Length = 220

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 647 QDIVVSQPWTAAQSGGTGI-ELCNVPGPSNRIYTEPCTSSQTQVEPT 784
           QD VV++P  AA + G G  E    P P  R+ + PC  +   +EPT
Sbjct: 143 QDEVVARPAAAAGADGGGAGEDRGHPPPRERLSSAPCREASPLLEPT 189


>07_03_0749 +
           21212463-21212911,21212976-21213305,21213336-21213436,
           21213758-21213883,21213962-21214083,21214177-21214450,
           21214767-21215004,21215101-21215248,21215400-21215732
          Length = 706

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 583 LTLITWKLPAPSSSEPIAACIPITFNTLXSNPDNFAYIAGLTSAPLA 443
           L ++   LP P+++ P+A C P   NT  +    F    GL +A LA
Sbjct: 16  LAVVVVTLPLPATAAPVAECDPGVANTNVTGNSAFDRNLGLLAAALA 62


>04_04_0137 -
           23053148-23053798,23053911-23054146,23054268-23054458,
           23054587-23056010
          Length = 833

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = +2

Query: 833 VPTSSPESIVTPLSPVQYEPTTQSHRERSXRVRSPSQICARLTQAERAV 979
           V  S      +P SP    P T S+RERS R  SPS   + LT    +V
Sbjct: 281 VTPSEKNKAASPYSPQC--PRTPSNRERSSRAHSPSSSVSDLTSVSTSV 327


>03_02_0218 -
           6522330-6522458,6523257-6523328,6523555-6523707,
           6524370-6524543,6525655-6525835,6525923-6525990
          Length = 258

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -3

Query: 565 KLPAPSSSEPIAAC---IPITFNTLXSNPDNFAYIAGL 461
           KL     S+PIA C   + I+FN    N DN++YI  L
Sbjct: 216 KLIQKGFSDPIALCQRPVSISFNASERNSDNYSYIKSL 253


>05_05_0337 - 24176184-24176858
          Length = 224

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 695 TGIELCNVPGPSNRIYTEPCTSSQTQVEPTRRSQAFDLDYDSVEDGVPTSSPESI 859
           T    CN PGPS  ++T  C  + TQV  +   +  D+  D  +   P  + E++
Sbjct: 30  THTHTCNPPGPSATMHTHTCLHTHTQVFASGSGED-DIKEDLTKTRRPLGNREAV 83


>01_06_1097 +
           34507376-34507395,34509380-34511214,34511263-34511598,
           34511800-34513691
          Length = 1360

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 788 RSQAFDLDYDSVEDGVPTSSPESIVTPLSPVQYEPTTQSH 907
           R   FDL YDS E  +P S+P  + T  +P    P  QS+
Sbjct: 511 RRNPFDLPYDSEEAAIPGSAPSVLHTRKNPFDL-PLDQSN 549


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,774,355
Number of Sequences: 37544
Number of extensions: 487796
Number of successful extensions: 1270
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3619931772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)