Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L19
         (1188 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   7.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   9.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 788 RSQAFDLDYDSVE-DGVPTSSPESIVTPLSPVQY-EPTTQSHRERSXRV 928
           RS    +  +  E + + TS    I+TP+SP  Y +P +    E   R+
Sbjct: 294 RSDQMGVKIEPAEAESLSTSGSSGILTPVSPYGYVKPISPEQEELIHRL 342


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +2

Query: 737 IYTEPCTSSQTQVEPTRRSQAFDLDYDSVEDGVPTSSPESIVTPLS 874
           I  E       + +   R+  FDLDY+  E+  P +   +I   +S
Sbjct: 530 ITNEEAEKRGKEYDAAGRTYLFDLDYNESEEQCPYTVDAAIYGNIS 575


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,376
Number of Sequences: 438
Number of extensions: 4946
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40488336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)