Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_L17
(1195 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944 92 7e-19
02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254 92 7e-19
02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907 92 7e-19
04_01_0486 - 6404315-6404333,6404803-6405260 30 3.1
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 29 7.2
11_01_0183 - 1440460-1440467,1440832-1440957,1440965-1442858 29 9.5
09_02_0565 + 10710770-10711003,10711368-10711527,10712277-107124... 29 9.5
08_01_0620 - 5416197-5416225,5416333-5416652,5417144-5417235,541... 29 9.5
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 9.5
>06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944
Length = 51
Score = 92.3 bits (219), Expect = 7e-19
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = +3
Query: 78 MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 224
M +HK F IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1 MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254
Length = 51
Score = 92.3 bits (219), Expect = 7e-19
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = +3
Query: 78 MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 224
M +HK F IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907
Length = 51
Score = 92.3 bits (219), Expect = 7e-19
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = +3
Query: 78 MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 224
M +HK F IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>04_01_0486 - 6404315-6404333,6404803-6405260
Length = 158
Score = 30.3 bits (65), Expect = 3.1
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = -3
Query: 974 KGGXVSGK-RQGRNRRAHGGASRGKRLXSL*SXRXSPPLT*ASIFVMLVRGAEPMEKRQQ 798
+GG G+ R+GR R A GG R + SPP + + G +R +
Sbjct: 53 RGGASGGRGRRGRQRAAQGGGGRQRARGGGEVAVVSPPGRSPPLRQIWQEGRRRQGRRAR 112
Query: 797 RGLFTVPGLLLAFCSHVLS 741
RGL G L+ C L+
Sbjct: 113 RGLVVAGGGLVRRCGGELA 131
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 29.1 bits (62), Expect = 7.2
Identities = 15/53 (28%), Positives = 20/53 (37%)
Frame = +1
Query: 799 CWRFSIGSAPLTSITKIDAQVRGGEXRXDYKDXRRFPLEAPPCALLFRPCRLP 957
CWR + T D Q + +KD P + P C L+F P P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335
>11_01_0183 - 1440460-1440467,1440832-1440957,1440965-1442858
Length = 675
Score = 28.7 bits (61), Expect = 9.5
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = -3
Query: 215 PSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSCQNKVKESG 36
P P +P+ + + +S A P P Q + F N K M + ++ K ++
Sbjct: 69 PLPKSPVPIKATPISAAFPTPQHEDESSDQDYKPFCKNKKPAMPKRAKRPQQAEKSNDAN 128
Query: 35 VLRNSL 18
+ R S+
Sbjct: 129 IKRRSI 134
>09_02_0565 +
10710770-10711003,10711368-10711527,10712277-10712477,
10712564-10712628,10712740-10712767,10712847-10712923,
10713023-10713109,10713572-10713622,10713857-10713937,
10714125-10714346,10714424-10714517,10714608-10714748,
10716383-10716444,10716519-10717106
Length = 696
Score = 28.7 bits (61), Expect = 9.5
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 90 KXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKR 200
K IIKR+ AK+L+Q P++ + TG +AKR
Sbjct: 214 KETIIKREAAKRLEQTSEEPEYAPLPTGPGAVADAKR 250
>08_01_0620 - 5416197-5416225,5416333-5416652,5417144-5417235,
5417304-5417394,5417489-5417577,5417812-5417929,
5418007-5418098,5418180-5418215,5418323-5418403,
5418510-5418617,5418809-5418901,5419045-5419146,
5419345-5419449,5419526-5419612,5419952-5420227
Length = 572
Score = 28.7 bits (61), Expect = 9.5
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = -3
Query: 1085 GXNXGXXQPAQXGGNDXPRXGXPTXXAXGKPHASRR-EKGGXVSGKRQGR----NRRAHG 921
G G + GG R G + G RR +GG G+R GR +R++ G
Sbjct: 500 GGRRGGRSGDRFGGRSGDRFGGRSGGRFGGRDGGRRGGRGGRDGGRRGGRGGFQSRQSAG 559
Query: 920 GASRGKR 900
AS GK+
Sbjct: 560 TASTGKK 566
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 9.5
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 631 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 786
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,447,885
Number of Sequences: 37544
Number of extensions: 490295
Number of successful extensions: 1380
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3643211076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -