Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_L16
(1312 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.38
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 33 0.50
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 33 0.66
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 32 1.2
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 31 1.5
07_03_1136 + 24218601-24218734,24218769-24219906 31 2.7
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 31 2.7
07_01_0080 + 587674-588510 30 4.6
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 29 6.1
11_06_0610 - 25449085-25453284 29 8.1
06_03_0082 + 16363742-16364632 29 8.1
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 8.1
01_03_0005 + 11568545-11569119,11569179-11569191 29 8.1
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.5 bits (73), Expect = 0.38
Identities = 17/34 (50%), Positives = 17/34 (50%)
Frame = -3
Query: 434 PPXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKGG 333
PP P PA G K PPPP P G KKGG
Sbjct: 344 PPPPPPAKGPPPPPPPKGPSPPPPPPPGG-KKGG 376
Score = 31.1 bits (67), Expect = 2.0
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 437 PPPXPXPAGGXGXFXXKKKXXPPPPXPXG 351
PPP P PA K PPPP P G
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKG 343
Score = 29.1 bits (62), Expect = 8.1
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -3
Query: 434 PPXPXPAGGXGXFXXKKKXXPPPPXPXGXTKK 339
PP P P GG KK PPPP P G +
Sbjct: 364 PPPPPPPGG-------KKGGPPPPPPKGGASR 388
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 33.1 bits (72), Expect = 0.50
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = +3
Query: 147 PPXPWXGXRXPRPLXXGPGVXXPPPXXXXAXAGPXXRNXPVXGTXVXXPPP 299
PP P PRP GPG PP GP P G PPP
Sbjct: 351 PPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALP-GGPRARGPPP 400
Score = 31.9 bits (69), Expect = 1.2
Identities = 23/76 (30%), Positives = 23/76 (30%)
Frame = +3
Query: 138 PTXPPXPWXGXRXPRPLXXGPGVXXPPPXXXXAXAGPXXRNXPVXGTXVXXPPPXXXRA* 317
P P P P P G G PPP A A P P G PP R
Sbjct: 325 PAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAP---RPPGPGPGPPPPPGAAGRGG 381
Query: 318 XXXXPPPLLRXPXRXG 365
PP L P G
Sbjct: 382 GGPPPPALPGGPRARG 397
Score = 30.3 bits (65), Expect = 3.5
Identities = 20/66 (30%), Positives = 22/66 (33%)
Frame = -3
Query: 452 GXXXHPPPXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKGGGXXXXLRPXXXGGRXXHXXP 273
G PPP P PA P PP P G +GGG P GG P
Sbjct: 344 GAGSGPPPPPPPAAPAAP--RPPGPGPGPPPPPGAAGRGGGGPPP--PALPGGPRARGPP 399
Query: 272 XHRXVP 255
+ P
Sbjct: 400 PFKKSP 405
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 32.7 bits (71), Expect = 0.66
Identities = 22/68 (32%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Frame = +3
Query: 141 TXPPXPWXGXRXPRPLXXGPGVXXPPPXXXXAXAG--PXXRNXPVXGTXVXXPPPXXXRA 314
T P R P P P PPP A G P PV GT PPP
Sbjct: 256 TLPNGSGGPPRPPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPPPLANG 315
Query: 315 *XXXXPPP 338
PPP
Sbjct: 316 PPRSIPPP 323
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.9 bits (69), Expect = 1.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 437 PPPXPXPAGGXGXFXXKKKXXPPPPXP 357
PPP P P+G F PPPP P
Sbjct: 548 PPPPPPPSGNKPAFSPPPPPPPPPPPP 574
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 31.5 bits (68), Expect = 1.5
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -3
Query: 434 PPXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKGGGXXXXLRP 309
P P P G F K PPPP P G + G +RP
Sbjct: 197 PEPPKPCGCSHAFVCVCKPAPPPPPPCGCSGGHGNCGCGIRP 238
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 30.7 bits (66), Expect = 2.7
Identities = 18/64 (28%), Positives = 18/64 (28%)
Frame = -2
Query: 921 GGGXXPPPXPXXXGXXXXXXXXXXXGRXXXGTPPPXXXXGGGXXXXXXPXXXXXRXXXXX 742
GGG PP P G G G P GGG P
Sbjct: 112 GGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGR 171
Query: 741 PPGG 730
PPGG
Sbjct: 172 PPGG 175
Score = 29.9 bits (64), Expect = 4.6
Identities = 30/102 (29%), Positives = 31/102 (30%)
Frame = -3
Query: 452 GXXXHPPPXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKGGGXXXXLRPXXXGGRXXHXXP 273
G PP P AGG G PP P G GGG + GG P
Sbjct: 112 GGGGGPPSLPPGAGGGGG------ARPPAPGGGG----GGGAPRRVLGGGGGGGALARPP 161
Query: 272 XHRXVPAXWPCXCXLXXGGGPXDPXTXXEGAGGTXTXPGXGG 147
A GGGP G GG PG GG
Sbjct: 162 GGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGG 203
Score = 29.5 bits (63), Expect = 6.1
Identities = 23/94 (24%), Positives = 25/94 (26%)
Frame = +3
Query: 642 TPPPPPXXSXXXXXXXGGXXXARXXXXAXXPXXXXXXSPSXXPPXXXXRXGXPXPSXGXG 821
TP P P GG A P P PP G P+ G G
Sbjct: 79 TPRPLPIKLLGLPPGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGG 138
Query: 822 GGXXSXXXXXXCXXPXXXXPPXXGGRGGGXXPRP 923
GG + GG GG RP
Sbjct: 139 GGGGAPRRVLGGGGGGGALARPPGGGRGGALGRP 172
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 30.7 bits (66), Expect = 2.7
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -3
Query: 464 GGXTGXXXHPPPXPXPAGGXGXFXXKKKXXPPPPXP 357
GG + PPP P P K PPPP P
Sbjct: 27 GGFSPTAAKPPPPPSPRANGTAAAAKPSASPPPPPP 62
>07_01_0080 + 587674-588510
Length = 278
Score = 29.9 bits (64), Expect = 4.6
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -3
Query: 461 GXTGXXXHPPPXPXPAGGXGXFXXKKKXXPPPPXP 357
G G PPP P P G PPPP P
Sbjct: 83 GGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPPP 117
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 29.5 bits (63), Expect = 6.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 138 PTXPPXPWXGXRXPRPLXXGPGVXXPPP 221
P+ PP P P P GPG PPP
Sbjct: 589 PSPPPAPKAAPPPPPPKSTGPGPPRPPP 616
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 8.1
Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Frame = +3
Query: 147 PPXPWXGXRXPRP-LXXGPGVXXPPPXXXXAXAGPXXRNXPVXGTXVXXPPP---XXXRA 314
PP P P P + P + PPP P ++ P + PPP A
Sbjct: 1145 PPPPEKSPPPPAPVILPPPPIKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPA 1204
Query: 315 *XXXXPPPLLRXP 353
PPP+ P
Sbjct: 1205 PVISPPPPVKSPP 1217
Score = 29.1 bits (62), Expect = 8.1
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +3
Query: 147 PPXPWXGXRXPRP-LXXGPGVXXPPPXXXXAXAGPXXRNXPVXGTXVXXPPP 299
PP P P P + P V PPP P ++ P + PPP
Sbjct: 1177 PPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPPPPVKSPPPPAPVILPPPP 1228
Score = 29.1 bits (62), Expect = 8.1
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +3
Query: 147 PPXPWXGXRXPRP-LXXGPGVXXPPPXXXXAXAGPXXRNXPVXGTXVXXPPP 299
PP P P P + P V PPP P ++ P + PPP
Sbjct: 1193 PPPPVKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPPPP 1244
>06_03_0082 + 16363742-16364632
Length = 296
Score = 29.1 bits (62), Expect = 8.1
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = -2
Query: 465 GGGXRXXXPSPPXXXPRXGXGXVXXKKKKXPPPPXXEXXNEE 340
GGG P PP P G + PPP E EE
Sbjct: 163 GGGEERPPPPPPPPFPDDSDGGDGASGEDLEPPPLEEEEEEE 204
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 8.1
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +2
Query: 206 PXAPPPXXAGTXRAMXPELAGAGDXXXPPAPXXXAGV 316
P PPP T P + G G PPAP G+
Sbjct: 1109 PPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGI 1145
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 29.1 bits (62), Expect = 8.1
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = -3
Query: 437 PPPXPXPAGGXGXFXXKKKXXPPPPXP--XGXTKKGGGXXXXLRPXXXGG 294
PP P GG G PPPP G + GGG P GG
Sbjct: 72 PPSYPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGG 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,133,719
Number of Sequences: 37544
Number of extensions: 610669
Number of successful extensions: 2222
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2033
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4097157504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -