Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_L16
(1312 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 36 0.048
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 33 0.45
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.8
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 31 1.8
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 31 1.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.8
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 4.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 4.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 4.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 4.2
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 7.3
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 7.3
AF068713-16|AAD34663.1| 156|Caenorhabditis elegans Ground-like ... 29 7.3
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 29 9.6
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 9.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 9.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 9.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 9.6
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 36.3 bits (80), Expect = 0.048
Identities = 29/96 (30%), Positives = 31/96 (32%)
Frame = -3
Query: 437 PPPXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKGGGXXXXLRPXXXGGRXXHXXPXHRXV 258
PP P P G G + P PP P G + GG P GG P
Sbjct: 256 PPGPPGPPGQDGSGGAAQPGPPGPPGPPGNDGQPGG------PGQPGGPGQDGGPG--TD 307
Query: 257 PAXWPCXCXLXXGGGPXDPXTXXEGAGGTXTXPGXG 150
A PC GGG G GG T G G
Sbjct: 308 AAYCPCPPRTPAGGGGGGDFPAGGGGGGYSTGGGGG 343
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 33.1 bits (72), Expect = 0.45
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = +3
Query: 138 PTXPPXPWXGXRXPRPLXXGPGVXXPPPXXXXAXAGPXXRNXPVXGTXVXXPPP 299
P PP PW R P P P PPP P P G PPP
Sbjct: 37 PWGPPPPWHRNRGPPPFGPPPPWDRPPPPWRR----PPWHRRPPWGLPPPPPPP 86
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.8
Identities = 22/77 (28%), Positives = 23/77 (29%)
Frame = +3
Query: 138 PTXPPXPWXGXRXPRPLXXGPGVXXPPPXXXXAXAGPXXRNXPVXGTXVXXPPPXXXRA* 317
P PP P G P P PP P R P + PPP R
Sbjct: 285 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 344
Query: 318 XXXXPPPLLRXPXRXGG 368
PPP R P G
Sbjct: 345 GGMPPPPPPRYPSAGPG 361
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 31.1 bits (67), Expect = 1.8
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = -3
Query: 437 PPPXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKGGGXXXXLRPXXXGG 294
PPP P + G PPPP P G G G P G
Sbjct: 612 PPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSG 659
Score = 28.7 bits (61), Expect = 9.6
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -3
Query: 437 PPPXPXPAGGXGXFXXKKKXXPPPPXP 357
PPP P P G PPPP P
Sbjct: 610 PPPPPPPPQSFGMAPISSAAPPPPPPP 636
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 31.1 bits (67), Expect = 1.8
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = -3
Query: 437 PPPXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKGGGXXXXLRPXXXGG 294
PPP P + G PPPP P G G G P G
Sbjct: 438 PPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSG 485
Score = 28.7 bits (61), Expect = 9.6
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -3
Query: 437 PPPXPXPAGGXGXFXXKKKXXPPPPXP 357
PPP P P G PPPP P
Sbjct: 436 PPPPPPPPQSFGMAPISSAAPPPPPPP 462
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.8
Identities = 22/77 (28%), Positives = 23/77 (29%)
Frame = +3
Query: 138 PTXPPXPWXGXRXPRPLXXGPGVXXPPPXXXXAXAGPXXRNXPVXGTXVXXPPPXXXRA* 317
P PP P G P P PP P R P + PPP R
Sbjct: 295 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 354
Query: 318 XXXXPPPLLRXPXRXGG 368
PPP R P G
Sbjct: 355 GGMPPPPPPRYPSAGPG 371
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.9 bits (64), Expect = 4.2
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 136 NRXXPPXPGXVXVPPAPSXXVXGSXGPPP 222
N PP PG +PP P G PPP
Sbjct: 71 NGFIPPPPGPGGIPPPPPMFAGGIPPPPP 99
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = -3
Query: 464 GGXTGXXXHPPPXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKG 336
GG PPP P P GG PPPP P G K G
Sbjct: 749 GGLPPISGGPPPPPPPPGGC--------PPPPPPPPPGGFKGG 783
Score = 29.1 bits (62), Expect = 7.3
Identities = 19/64 (29%), Positives = 20/64 (31%)
Frame = +3
Query: 147 PPXPWXGXRXPRPLXXGPGVXXPPPXXXXAXAGPXXRNXPVXGTXVXXPPPXXXRA*XXX 326
PP P P P+ GP PP GP P G PPP
Sbjct: 726 PPPPPPPGGLP-PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 784
Query: 327 XPPP 338
PPP
Sbjct: 785 PPPP 788
Score = 29.1 bits (62), Expect = 7.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -3
Query: 437 PPPXPXPAGGXGXFXXKKKXXPPPPXPXG 351
PPP P P GG K PPPP P G
Sbjct: 770 PPPPPPPPGGF-------KGGPPPPPPPG 791
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = -3
Query: 464 GGXTGXXXHPPPXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKG 336
GG PPP P P GG PPPP P G K G
Sbjct: 749 GGLPPISGGPPPPPPPPGGC--------PPPPPPPPPGGFKGG 783
Score = 29.1 bits (62), Expect = 7.3
Identities = 19/64 (29%), Positives = 20/64 (31%)
Frame = +3
Query: 147 PPXPWXGXRXPRPLXXGPGVXXPPPXXXXAXAGPXXRNXPVXGTXVXXPPPXXXRA*XXX 326
PP P P P+ GP PP GP P G PPP
Sbjct: 726 PPPPPPPGGLP-PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 784
Query: 327 XPPP 338
PPP
Sbjct: 785 PPPP 788
Score = 29.1 bits (62), Expect = 7.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -3
Query: 437 PPPXPXPAGGXGXFXXKKKXXPPPPXPXG 351
PPP P P GG K PPPP P G
Sbjct: 770 PPPPPPPPGGF-------KGGPPPPPPPG 791
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = -3
Query: 464 GGXTGXXXHPPPXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKG 336
GG PPP P P GG PPPP P G K G
Sbjct: 332 GGLPPISGGPPPPPPPPGGC--------PPPPPPPPPGGFKGG 366
Score = 29.1 bits (62), Expect = 7.3
Identities = 19/64 (29%), Positives = 20/64 (31%)
Frame = +3
Query: 147 PPXPWXGXRXPRPLXXGPGVXXPPPXXXXAXAGPXXRNXPVXGTXVXXPPPXXXRA*XXX 326
PP P P P+ GP PP GP P G PPP
Sbjct: 309 PPPPPPPGGLP-PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 367
Query: 327 XPPP 338
PPP
Sbjct: 368 PPPP 371
Score = 29.1 bits (62), Expect = 7.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -3
Query: 437 PPPXPXPAGGXGXFXXKKKXXPPPPXPXG 351
PPP P P GG K PPPP P G
Sbjct: 353 PPPPPPPPGGF-------KGGPPPPPPPG 374
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = -2
Query: 945 GXXGXXXXGGGXXPPPXPXXXGXXXXXXXXXXXGRXXXGTPPPXXXXGGG 796
G G GGG PPP P G G G PP GGG
Sbjct: 37 GCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGG----GCAPPPAPCGGG 82
Score = 28.7 bits (61), Expect = 9.6
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -3
Query: 464 GGXTGXXXHPPPXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKGGG 330
GG G P P GG G PPP P G GGG
Sbjct: 43 GGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGG 87
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = -2
Query: 945 GXXGXXXXGGGXXPPPXPXXXGXXXXXXXXXXXGRXXXGTPPPXXXXGGG 796
G G GGG PPP P G G G PP GGG
Sbjct: 37 GCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGG----GCAPPPAPCGGG 82
Score = 28.7 bits (61), Expect = 9.6
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -3
Query: 464 GGXTGXXXHPPPXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKGGG 330
GG G P P GG G PPP P G GGG
Sbjct: 43 GGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGG 87
>AF068713-16|AAD34663.1| 156|Caenorhabditis elegans Ground-like
(grd related) protein31 protein.
Length = 156
Score = 29.1 bits (62), Expect = 7.3
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = -3
Query: 452 GXXXHPPPXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKG 336
G PPP P GG G KK+ P P G G
Sbjct: 43 GCGCAPPPPPCCGGGCGGCGRKKRSLPEKPTFVGIADSG 81
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 28.7 bits (61), Expect = 9.6
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -3
Query: 464 GGXTGXXXHPPPXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKG 336
GG G PPP P P G G KK+ P P G + G
Sbjct: 58 GGGYGCGIPPPPPPPPQCGCG---RKKRSLPEKPTFFGISASG 97
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.7 bits (61), Expect = 9.6
Identities = 31/112 (27%), Positives = 34/112 (30%), Gaps = 2/112 (1%)
Frame = +1
Query: 136 NRXXPPXPGXVXVPPAPSXXVXGSXGPPPXXSXHXQGHXAGTXRCXGXXXSXRPPXXXGR 315
N PP PG PPAP GPPP G P G
Sbjct: 703 NLNAPPPPGIPGYPPAPPPP---GVGPPPPQGIPPMGFDPN--------KPPPPMFQQGF 751
Query: 316 NXXXXPPPF--FVXPLXXXXXXXXXXXXXNXPXPPAGXGXGGGWXXXPVXPP 465
N PPPF P+ + P PP+ G GG P PP
Sbjct: 752 NAGAPPPPFGRGAGPM-SSFPPPPRGGMHHMPPPPSFRGGRGGHGGPP--PP 800
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 9.6
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = -3
Query: 455 TGXXXHPP---PXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKG 336
TG PP P P PAGG + PPPP P G G
Sbjct: 269 TGSPPPPPTGSPPPPPAGGSPP-PPRAGSPPPPPPPRGSPPTG 310
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 9.6
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = -3
Query: 455 TGXXXHPP---PXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKG 336
TG PP P P PAGG + PPPP P G G
Sbjct: 290 TGSPPPPPTGSPPPPPAGGSPP-PPRAGSPPPPPPPRGSPPTG 331
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 9.6
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = -3
Query: 455 TGXXXHPP---PXPXPAGGXGXFXXKKKXXPPPPXPXGXTKKG 336
TG PP P P PAGG + PPPP P G G
Sbjct: 275 TGSPPPPPTGSPPPPPAGGSPP-PPRAGSPPPPPPPRGSPPTG 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,447,243
Number of Sequences: 27780
Number of extensions: 298721
Number of successful extensions: 1144
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3663150656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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