Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L14
         (1164 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   186   7e-48
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   185   1e-47
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    29   0.93 
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    29   1.6  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    29   1.6  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   5.0  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    27   6.6  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   8.7  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  186 bits (452), Expect = 7e-48
 Identities = 94/160 (58%), Positives = 114/160 (71%)
 Frame = +3

Query: 198 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 377
           R RGGN K+RALRLD+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 47  RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106

Query: 378 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 557
            PFR WYE+HY + +G  KG K T          +S+   RK+ AR   +KV+ ALE QF
Sbjct: 107 APFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQF 160

Query: 558 HTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 677
             GRL A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 161 AAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200



 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 28/43 (65%), Positives = 34/43 (79%)
 Frame = +2

Query: 62  GLSRDHWHXRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH 190
           G++RD  H R ATG KRA  RKKRK+ELGR  +NTR+GP+RIH
Sbjct: 2   GITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIH 44


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  185 bits (450), Expect = 1e-47
 Identities = 94/160 (58%), Positives = 114/160 (71%)
 Frame = +3

Query: 198 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 377
           R RGGN K+RALRLD+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 47  RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106

Query: 378 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 557
            PFR WYE+HY + +G  KG K T          +S+   RK+ AR   +KV+ ALE QF
Sbjct: 107 APFRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQF 160

Query: 558 HTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 677
             GRL A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 161 AAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200



 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 28/43 (65%), Positives = 34/43 (79%)
 Frame = +2

Query: 62  GLSRDHWHXRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH 190
           G++RD  H R ATG KRA  RKKRK+ELGR  +NTR+GP+RIH
Sbjct: 2   GITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIH 44


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 654 DRTRVLCLLRCNHRRDHTDLGDSPRKPANAPCGIALLE 541
           D   + CLLR  H+RD  +  +  RK  N   G  LLE
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = +3

Query: 180 SVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNA 359
           +V +P  +R   T  R+L   +G  S  S  ++ +TR    V +AS+N L+   +   ++
Sbjct: 534 TVISPQPTRRSRTPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPSS 590

Query: 360 IVVVDATPFRQWYE 401
             V   TPF   +E
Sbjct: 591 STVQRQTPFHSPFE 604


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 243 CPDAAHGT*YF--HHVNEXEWIR*GPSLVFAAGRPNSYFLFLRMGARFPPV 97
           CPD + G  Y     V +  ++R  PS+++A    ++  LF+R+  ++PP+
Sbjct: 307 CPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYPPL 357


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/73 (21%), Positives = 33/73 (45%)
 Frame = +3

Query: 375 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 554
           +TP     + H       KKG+K+  A++    ++R  + AR+  A +   K   ++E+ 
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813

Query: 555 FHTGRLLACVASR 593
                +LA +  +
Sbjct: 814 TDPQTILAILKQK 826


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 171 SVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLV 350
           SVL +S    S+  + KYR   + T    WG E        I+  + +   E   T  L+
Sbjct: 128 SVLGMSYSNTSKHESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFASRQEEEAPTDDLM 187

Query: 351 KNAIVVV 371
           + A+ +V
Sbjct: 188 ELALTIV 194


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 258 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 431
           WGS+     +K  + +V+  +++ +  +T  L         AT F  + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309

Query: 432 K 434
           +
Sbjct: 310 Q 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,920
Number of Sequences: 5004
Number of extensions: 57346
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 623552966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)