Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L14
         (1164 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607...   219   5e-57
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365...   204   1e-52
01_02_0013 + 10162478-10163581                                         29   5.3  
01_01_1134 + 8994315-8995892                                           29   9.3  

>04_03_0510 -
           16659486-16659564,16659772-16659947,16660464-16660797,
           16661564-16661636,16661780-16661783
          Length = 221

 Score =  219 bits (534), Expect = 5e-57
 Identities = 106/170 (62%), Positives = 129/170 (75%), Gaps = 8/170 (4%)
 Frame = +3

Query: 198 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 377
           R RGGN K+RALRLDTGN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA
Sbjct: 48  RVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 107

Query: 378 TPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIINKKRSQKTARKYLARQRLAKV 533
            PF+QWY +HY + +GRKK         A+  E E A    K+S    RK   RQ+   +
Sbjct: 108 APFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTL 167

Query: 534 EGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 683
           +  +EEQF +GRLLAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 168 DSHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = +2

Query: 62  GLSRDHWHXRRATGGKRAPIRKKRKYELGRPAANTRLGPQR 184
           G+SRD  H RRATGGK+   RKKRKYELGR  ANT+L   +
Sbjct: 2   GISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNK 42


>02_03_0270 +
           17135464-17135467,17135583-17135655,17136253-17136583,
           17136916-17136969,17137219-17137394,17137607-17137685
          Length = 238

 Score =  204 bits (497), Expect = 1e-52
 Identities = 106/187 (56%), Positives = 129/187 (68%), Gaps = 25/187 (13%)
 Frame = +3

Query: 198 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 377
           R RGGN K+RALRLDTGN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA
Sbjct: 48  RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 107

Query: 378 TPFRQWYESHYTLPLGRKKGA-------------------------KLTEAEEAIINKKR 482
            PF+QWY +HY + +GRKK A                         K  +AE      K+
Sbjct: 108 APFKQWYLTHYGVDIGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLKGQDAEATTEEAKK 167

Query: 483 SQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRK 662
           S    RK   RQ+   ++  +EEQF +GRLLAC++SRPGQCGRADGYILEGKELEFY++K
Sbjct: 168 SNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKK 227

Query: 663 IKSKRAK 683
           ++ K+ K
Sbjct: 228 LQRKKGK 234



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = +2

Query: 62  GLSRDHWHXRRATGGKRAPIRKKRKYELGRPAANTRLGPQR 184
           G+SRD  H RRATGGK+   RKKRKYELGR  ANT+L   +
Sbjct: 2   GISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNK 42


>01_02_0013 + 10162478-10163581
          Length = 367

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 211 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPL 348
           E +S  RC   P+   G R  + A   SL + ++HL   +C  RPL
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283


>01_01_1134 + 8994315-8995892
          Length = 525

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 246 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 389
           G FS    C+ RK   +DV     +    RT    +N+ VV D+T F+
Sbjct: 146 GLFSRDCPCAGRKAVTVDVASEPRSPATPRTHARFENSHVVADSTIFK 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,252,218
Number of Sequences: 37544
Number of extensions: 427316
Number of successful extensions: 1100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3549867584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)