Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L14
         (1164 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   296   2e-82
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    24   2.9  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    24   2.9  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   9.0  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   9.0  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  296 bits (727), Expect = 2e-82
 Identities = 136/162 (83%), Positives = 149/162 (91%)
 Frame = +3

Query: 198 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 377
           R+RGGN KYRALRLDTGNFSWGSEC+TRKTRIIDVVYNASNNELVRTKTLVKNAIV +DA
Sbjct: 47  RTRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDA 106

Query: 378 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 557
           TPFRQWYE HY LPLGRK+GAKLTEAEE ++NKKRS+K   KY ARQR AKVE ALEEQF
Sbjct: 107 TPFRQWYEGHYVLPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQF 166

Query: 558 HTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 683
            TGR+LAC++SRPGQCGR DGYILEGKELEFY+R+IKSK+AK
Sbjct: 167 ATGRVLACISSRPGQCGREDGYILEGKELEFYMRRIKSKKAK 208



 Score = 91.1 bits (216), Expect = 2e-20
 Identities = 38/44 (86%), Positives = 42/44 (95%)
 Frame = +2

Query: 62  GLSRDHWHXRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 193
           G+SRDHWH RRATGGKR PIRKKRK+ELGRPAANT+LGPQRIH+
Sbjct: 2   GISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHT 45


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 368 YNNCILDKGLCT 333
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 368 YNNCILDKGLCT 333
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 368 YNNCILDKGLCTHQ 327
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 368 YNNCILDKGLCTHQ 327
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,975
Number of Sequences: 438
Number of extensions: 4516
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39524328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)