Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_L13
(1159 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9NY12 Cluster: H/ACA ribonucleoprotein complex subunit... 149 2e-34
UniRef50_Q5RJV1 Cluster: H/ACA ribonucleoprotein complex subunit... 148 2e-34
UniRef50_P28007 Cluster: H/ACA ribonucleoprotein complex subunit... 112 1e-23
UniRef50_Q5CN95 Cluster: Small nucleolar RNP proteins; Gar1p; n=... 109 1e-22
UniRef50_Q8I700 Cluster: Snornp protein gar1 homologue, putative... 97 6e-19
UniRef50_Q01ES1 Cluster: Gar1 Small nucleolar RNP protein GAR1, ... 96 2e-18
UniRef50_Q24CI3 Cluster: Gar1 protein RNA binding region contain... 94 7e-18
UniRef50_Q4U9W1 Cluster: SnoRNP (Nucleolar) protein, putative; n... 92 2e-17
UniRef50_A7ATB2 Cluster: Gar1 protein RNA binding region contain... 89 2e-16
UniRef50_Q2UUR9 Cluster: H/ACA small nucleolar RNP component GAR... 78 5e-13
UniRef50_Q4Q2B2 Cluster: Nucleolar protein family a, putative; n... 74 6e-12
UniRef50_Q868I6 Cluster: Nucleolar GAR1-like protein; n=2; Giard... 65 3e-09
UniRef50_O96722 Cluster: H/ACA ribonucleoprotein complex subunit... 62 2e-08
UniRef50_UPI000049A3D6 Cluster: snoRNP protein gar1; n=1; Entamo... 62 3e-08
UniRef50_A2FDM1 Cluster: snoRNP protein, putative; n=1; Trichomo... 38 0.49
UniRef50_O26972 Cluster: Uncharacterized protein MTH_886; n=1; M... 36 2.0
UniRef50_A5UKA2 Cluster: Predicted RNA-binding protein involved ... 34 8.0
>UniRef50_Q9NY12 Cluster: H/ACA ribonucleoprotein complex subunit 1;
n=28; Eukaryota|Rep: H/ACA ribonucleoprotein complex
subunit 1 - Homo sapiens (Human)
Length = 217
Score = 149 bits (360), Expect = 2e-34
Identities = 68/104 (65%), Positives = 83/104 (79%), Gaps = 2/104 (1%)
Frame = +3
Query: 282 QDAGPPEAVIPLGHYGWTVQDDLVCK--VDIEDVPYFNAPIFLENKEQIGKIDEIFGNLR 455
QD GPPE V+ LG + +DD+VCK D VPYFNAP++LENKEQIGK+DEIFG LR
Sbjct: 62 QDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLR 121
Query: 456 DYFVSVKLGENIKAKSFKEGQQFFIDPAKLLPLKRFLPQPPGAK 587
D++ SVKL EN+KA SFK+ Q+F+IDP KLLPL+RFLP+PPG K
Sbjct: 122 DFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEK 165
>UniRef50_Q5RJV1 Cluster: H/ACA ribonucleoprotein complex subunit
1-like protein; n=5; Fungi/Metazoa group|Rep: H/ACA
ribonucleoprotein complex subunit 1-like protein -
Xenopus tropicalis (Western clawed frog) (Silurana
tropicalis)
Length = 218
Score = 148 bits (359), Expect = 2e-34
Identities = 66/103 (64%), Positives = 85/103 (82%), Gaps = 2/103 (1%)
Frame = +3
Query: 285 DAGPPEAVIPLGHYGWTVQDDLVCKVDIED--VPYFNAPIFLENKEQIGKIDEIFGNLRD 458
D GPPE+V+ +G + +DD+VCK ++ VPYFNAPI+LENKEQIGK+DEIFG LRD
Sbjct: 56 DQGPPESVVEVGEFMHPCEDDVVCKCITQENRVPYFNAPIYLENKEQIGKVDEIFGQLRD 115
Query: 459 YFVSVKLGENIKAKSFKEGQQFFIDPAKLLPLKRFLPQPPGAK 587
++ S+KL EN+KA SFK+ Q+F+IDPAKLLPL+RFLP+PPG K
Sbjct: 116 FYFSIKLSENMKASSFKKLQKFYIDPAKLLPLQRFLPRPPGEK 158
>UniRef50_P28007 Cluster: H/ACA ribonucleoprotein complex subunit 1;
n=40; Eukaryota|Rep: H/ACA ribonucleoprotein complex
subunit 1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 205
Score = 112 bits (270), Expect = 1e-23
Identities = 47/95 (49%), Positives = 69/95 (72%)
Frame = +3
Query: 291 GPPEAVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIFLENKEQIGKIDEIFGNLRDYFVS 470
GPP+ V+ +G + + D+VC+ +PYFNAPI+LENK Q+GK+DEI G L + F +
Sbjct: 32 GPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFT 91
Query: 471 VKLGENIKAKSFKEGQQFFIDPAKLLPLKRFLPQP 575
+K G+ ++A SFKEG +F+I KLLP++RFLP+P
Sbjct: 92 IKCGDGVQATSFKEGDKFYIAADKLLPIERFLPKP 126
>UniRef50_Q5CN95 Cluster: Small nucleolar RNP proteins; Gar1p; n=2;
Cryptosporidium|Rep: Small nucleolar RNP proteins; Gar1p
- Cryptosporidium hominis
Length = 182
Score = 109 bits (262), Expect = 1e-22
Identities = 50/101 (49%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Frame = +3
Query: 288 AGPPEAVIPLGHYGWTVQDDLVCKVDIED-VPYFNAPIFLENKEQIGKIDEIFGNLRDYF 464
+GPP ++ LG + + +LVCK + D VPYFN IFLENKE+IGK+DEI G + YF
Sbjct: 32 SGPPSSITELGEVLHSSEHELVCKSFLNDQVPYFNGRIFLENKEEIGKVDEILGPINTYF 91
Query: 465 VSVKLGENIKAKSFKEGQQFFIDPAKLLPLKRFLPQPPGAK 587
S+K+ +KA+SF G + FIDP +LLP+ RFLP+ K
Sbjct: 92 FSIKMNNGVKAESFVTGTKIFIDPQQLLPMSRFLPKTSAQK 132
>UniRef50_Q8I700 Cluster: Snornp protein gar1 homologue, putative;
n=5; Plasmodium|Rep: Snornp protein gar1 homologue,
putative - Plasmodium falciparum (isolate 3D7)
Length = 209
Score = 97.5 bits (232), Expect = 6e-19
Identities = 45/79 (56%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Frame = +3
Query: 339 QDDLVCKVDIED-VPYFNAPIFLENKEQIGKIDEIFGNLRDYFVSVKLGENIKAKSFKEG 515
++DL+ K ++E+ VPYFN IFLENKE+IGK+DEI G + +++ SVKL E I+AKSF
Sbjct: 36 ENDLLLKNELENLVPYFNGRIFLENKEEIGKVDEILGPINEFYFSVKLKEGIRAKSFSSD 95
Query: 516 QQFFIDPAKLLPLKRFLPQ 572
FFID ++ LPL RFLPQ
Sbjct: 96 THFFIDKSQTLPLSRFLPQ 114
>UniRef50_Q01ES1 Cluster: Gar1 Small nucleolar RNP protein GAR1,
probable; n=3; Viridiplantae|Rep: Gar1 Small nucleolar
RNP protein GAR1, probable - Ostreococcus tauri
Length = 196
Score = 95.9 bits (228), Expect = 2e-18
Identities = 40/95 (42%), Positives = 66/95 (69%)
Frame = +3
Query: 282 QDAGPPEAVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIFLENKEQIGKIDEIFGNLRDY 461
+D GPP ++ +G + + ++VC + VPYFN ++LENK Q+GK++EIFG + D
Sbjct: 40 RDEGPPSSLEEIGTFLHACEGEIVCLSTNKKVPYFNGAVYLENKTQVGKVEEIFGPVNDK 99
Query: 462 FVSVKLGENIKAKSFKEGQQFFIDPAKLLPLKRFL 566
+VKL E + A+S+++G +F+I P KLLP++RF+
Sbjct: 100 MFTVKLIEGVNAESYEKGAKFYISPDKLLPVERFI 134
>UniRef50_Q24CI3 Cluster: Gar1 protein RNA binding region containing
protein; n=1; Tetrahymena thermophila SB210|Rep: Gar1
protein RNA binding region containing protein -
Tetrahymena thermophila SB210
Length = 204
Score = 93.9 bits (223), Expect = 7e-18
Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Frame = +3
Query: 282 QDAGPPEAVIPLGHYGWTVQDDLVCKV-DIEDVPYFNAPIFLENKEQIGKIDEIFGNLRD 458
+D GPPE V P+ + T D +V K D++ VP FN I+LENK ++G +DEI G +
Sbjct: 43 RDMGPPERVEPVCVFSHTCGDQIVVKATDVKKVPKFNRGIYLENKTKVGTVDEILGPIDG 102
Query: 459 YFVSVKLGENIKAKSFKEGQQFFIDPAKLLPLKRFLPQPPGA 584
++ S+KL E + A S+K G +F++ LP+ RFLP+P GA
Sbjct: 103 FYYSIKLVEGVSADSYKPGDKFYMGWDDTLPIDRFLPKPKGA 144
>UniRef50_Q4U9W1 Cluster: SnoRNP (Nucleolar) protein, putative; n=2;
Theileria|Rep: SnoRNP (Nucleolar) protein, putative -
Theileria annulata
Length = 174
Score = 92.3 bits (219), Expect = 2e-17
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Frame = +3
Query: 297 PEAVIPLGHYGWTVQDDLVCKVDIED-VPYFNAPIFLENKEQIGKIDEIFGNLRDYFVSV 473
P VI +G +++LV K + D VPYFN IFL NK+++GKIDEI G + +++ SV
Sbjct: 33 PSEVIEVGTVSHDCENELVIKCTLVDKVPYFNGRIFLSNKQEVGKIDEILGQVNNFYCSV 92
Query: 474 KLGENIKAKSFKEGQQFFIDPAKLLPLKRFLPQP 575
KL E KAKSF+ + +IDP + LP+ RF +P
Sbjct: 93 KLNEGFKAKSFETNSKLYIDPKQSLPMARFTGRP 126
>UniRef50_A7ATB2 Cluster: Gar1 protein RNA binding region containing
protein; n=1; Babesia bovis|Rep: Gar1 protein RNA
binding region containing protein - Babesia bovis
Length = 189
Score = 89.0 bits (211), Expect = 2e-16
Identities = 44/103 (42%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Frame = +3
Query: 288 AGPPEAVIPLGHYGWTVQDDLVCKVDIED-VPYFNAPIFLENKEQIGKIDEIFGNLRDYF 464
+GPP VI G ++ L+ K + VPYFN IFL NK++IGK+DEI G + +YF
Sbjct: 34 SGPPAEVIEAGTVIHDCEEQLLIKSKLSTCVPYFNGRIFLANKQEIGKVDEILGPINEYF 93
Query: 465 VSVKLGENIKAKSFKEGQQFFIDPAKLLPLKRFLPQPPGAKRG 593
SV L + KAKSF + +IDP + LP+ RF + P + G
Sbjct: 94 FSVSLLDGFKAKSFAKDSMVYIDPQQTLPVSRFTSKTPSSLLG 136
>UniRef50_Q2UUR9 Cluster: H/ACA small nucleolar RNP component GAR1;
n=1; Aspergillus oryzae|Rep: H/ACA small nucleolar RNP
component GAR1 - Aspergillus oryzae
Length = 272
Score = 77.8 bits (183), Expect = 5e-13
Identities = 34/83 (40%), Positives = 53/83 (63%)
Frame = +3
Query: 315 LGHYGWTVQDDLVCKVDIEDVPYFNAPIFLENKEQIGKIDEIFGNLRDYFVSVKLGENIK 494
+G + + ++VC+ +PYFNAPI+LENK IGK+DE+ G + + ++K E I
Sbjct: 27 MGSFMHACEGEMVCESINPKIPYFNAPIYLENKTPIGKVDEVLGPINQVYFTIKPQEGIV 86
Query: 495 AKSFKEGQQFFIDPAKLLPLKRF 563
A SFK G + +I KLLPL+++
Sbjct: 87 ATSFKPGDKVYIGGDKLLPLEKY 109
>UniRef50_Q4Q2B2 Cluster: Nucleolar protein family a, putative; n=4;
Trypanosomatidae|Rep: Nucleolar protein family a,
putative - Leishmania major
Length = 220
Score = 74.1 bits (174), Expect = 6e-12
Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Frame = +3
Query: 294 PPEAVIPLGHYGWTVQDDLVCKVDIEDV-PYFNAPIFLENKEQIGKIDEIFGNLRDYFVS 470
PPE V +G + + +LV KV V P FNA ++ E+K +IGKI+EI GN D S
Sbjct: 53 PPENVEEVGTFMNAAEGELVYKVTAHGVVPRFNAFVYTEHKAKIGKIEEILGNTTDVMFS 112
Query: 471 VKLGENIKAKSFKEGQQFFIDPAKLLPLKRFLPQPPGAKRG 593
VK ++A S EG + +I P + PL+ F P RG
Sbjct: 113 VKPSPGVQAASLSEGDKVYISPTQFTPLRLFTEPPKPRGRG 153
>UniRef50_Q868I6 Cluster: Nucleolar GAR1-like protein; n=2; Giardia
intestinalis|Rep: Nucleolar GAR1-like protein - Giardia
lamblia (Giardia intestinalis)
Length = 183
Score = 65.3 bits (152), Expect = 3e-09
Identities = 29/74 (39%), Positives = 43/74 (58%)
Frame = +3
Query: 375 VPYFNAPIFLENKEQIGKIDEIFGNLRDYFVSVKLGENIKAKSFKEGQQFFIDPAKLLPL 554
VP FN+P++ + +G IDE+FG + Y+ +VKL N+ K F GQ F + + +PL
Sbjct: 45 VPKFNSPVYNDKGADVGIIDEVFGPITGYYFTVKLHPNVTPKGFAVGQSFQMREGRTMPL 104
Query: 555 KRFLPQPPGAKRGA 596
RF PP +R A
Sbjct: 105 SRFTNPPPPPQRQA 118
>UniRef50_O96722 Cluster: H/ACA ribonucleoprotein complex subunit 1;
n=1; Encephalitozoon cuniculi|Rep: H/ACA
ribonucleoprotein complex subunit 1 - Encephalitozoon
cuniculi
Length = 195
Score = 62.5 bits (145), Expect = 2e-08
Identities = 33/92 (35%), Positives = 50/92 (54%)
Frame = +3
Query: 315 LGHYGWTVQDDLVCKVDIEDVPYFNAPIFLENKEQIGKIDEIFGNLRDYFVSVKLGENIK 494
LG + Q LV K+ +D+PY N+P+ + + IGK+DEI G + D V++K +
Sbjct: 32 LGKILYMCQGQLVIKLAAKDIPYPNSPVLDASSKIIGKVDEILGRIDDVHVTIKPDDQCS 91
Query: 495 AKSFKEGQQFFIDPAKLLPLKRFLPQPPGAKR 590
KEG+ F K +P KRFLP+ K+
Sbjct: 92 IS--KEGETLFSYADKFIPKKRFLPREETEKK 121
>UniRef50_UPI000049A3D6 Cluster: snoRNP protein gar1; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: snoRNP protein gar1 -
Entamoeba histolytica HM-1:IMSS
Length = 182
Score = 62.1 bits (144), Expect = 3e-08
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Frame = +3
Query: 282 QDAGPPEAVIPLGHYGWTVQDDLVCKV-DIEDVPYFNAPIFLENKEQIGKIDEIFGNLRD 458
+D P ++P G + + +V K P FNA ++ E K ++GK+ E+FG L D
Sbjct: 22 RDQQPSGELVPYGKFLHAAETVMVFKATSTTQYPAFNAIVYNEKKAEVGKVGEVFGPLND 81
Query: 459 YFVSVKLGENIKAKSFKEGQQFFIDPAKLLPLKRFLPQPPGAKRG 593
Y+ SV E +K S+ Q ++ KL + R P KRG
Sbjct: 82 YYFSVVPVEGVKPDSYNVDDQIYLYTDKLFSVDRLKNPPAPVKRG 126
>UniRef50_A2FDM1 Cluster: snoRNP protein, putative; n=1; Trichomonas
vaginalis G3|Rep: snoRNP protein, putative - Trichomonas
vaginalis G3
Length = 177
Score = 37.9 bits (84), Expect = 0.49
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = +3
Query: 309 IPLGHYGWTVQDDLVCKVDIED--VPYFNAPIFLENKEQIGKIDEIFGNLRDYFVSVKLG 482
I +G + + + V + +D VP + NK ++GK+ ++FG L D ++
Sbjct: 52 IEIGTFEYLANNTAVYHLSSKDNVVPLTQTFLMDANKNKVGKVGDVFGPLTDVRFNLVPE 111
Query: 483 ENIKAKSFKEGQQFFIDPAKLLPLKRFLPQPPGAKRG 593
+N K K G + + + P + P KRG
Sbjct: 112 DNSYLKKLKVGDKIYAPENRCHPESFYTDDAPAPKRG 148
>UniRef50_O26972 Cluster: Uncharacterized protein MTH_886; n=1;
Methanothermobacter thermautotrophicus str. Delta H|Rep:
Uncharacterized protein MTH_886 - Methanobacterium
thermoautotrophicum
Length = 92
Score = 35.9 bits (79), Expect = 2.0
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +3
Query: 390 APIFLENKEQIGKIDEIFGNLRDYFVSVKLGENIKAKSFK 509
AP+F + ++IGK+ +IFG R+ ++S+K I + F+
Sbjct: 28 APVFTSDGKRIGKVHDIFGPTRNPYISIKPSRAINPEKFE 67
>UniRef50_A5UKA2 Cluster: Predicted RNA-binding protein involved in
rRNA processing; n=1; Methanobrevibacter smithii ATCC
35061|Rep: Predicted RNA-binding protein involved in
rRNA processing - Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861)
Length = 95
Score = 33.9 bits (74), Expect = 8.0
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 396 IFLENKEQIGKIDEIFGNLRDYFVSVKLGENIKAKSFKE--GQQFFID-PAKLLPLKR 560
+F +K +IGK+ +FG + +VS+KL ++ K G++ F+ P P KR
Sbjct: 30 VFNSDKTKIGKVSYVFGPTKSPYVSIKLFKSANLDKIKRNYGEKLFVSRPKSKKPRKR 87
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,063,577
Number of Sequences: 1657284
Number of extensions: 9301671
Number of successful extensions: 21583
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21576
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 115066114169
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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