Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L13
         (1159 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...   103   6e-23
SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc...    27   3.7  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    27   6.5  
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    27   6.5  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score =  103 bits (246), Expect = 6e-23
 Identities = 46/96 (47%), Positives = 65/96 (67%)
 Frame = +3

Query: 288 AGPPEAVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIFLENKEQIGKIDEIFGNLRDYFV 467
           +GPP+ VI LG +    + ++VC+     +PYFNAPI+LENK QIGKIDE+FG +   + 
Sbjct: 24  SGPPDQVIELGLFMHDCEGEMVCQSTNVKIPYFNAPIYLENKSQIGKIDEVFGPMNQVYF 83

Query: 468 SVKLGENIKAKSFKEGQQFFIDPAKLLPLKRFLPQP 575
           +VK  E I + SFK G + ++   KL+PL RFLP+P
Sbjct: 84  TVKPSEGIVSSSFKVGDKVYLSGDKLIPLDRFLPKP 119


>SPCC1739.09c |cox13||cytochrome c oxidase subunit
           VIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 130

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -3

Query: 95  PMLLFITSN--YAYCRNSEHARDLKDS 21
           P L+  ++N  Y YC++ EHA+ ++D+
Sbjct: 67  PALILASANAYYIYCKHQEHAKHVEDT 93


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
 Frame = +3

Query: 297 PEAVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIFLENKE--QIGKIDEIFGNLRDYFVS 470
           PE ++  G Y  +V  DL     I    Y   P+F    E  Q+ ++ EI GN     + 
Sbjct: 201 PELLLRSGSYNHSV--DLYAFGCIVFEIYSLKPLFPGRNETDQLNRVCEILGNPGIDELD 258

Query: 471 VKLGENIKAKSFKEGQQFFIDPAKLLPLKRFLPQ 572
             L    +AK   +   F + P K  P+++ LPQ
Sbjct: 259 T-LHYWSQAKELAKRLGFMLPPTKPYPIQKLLPQ 291


>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 423 GKIDEIFGNLRDYFVSVKLGENIKAKSFKEGQQFFIDPAK 542
           GK   +FGN+  + VSVK   +   K  +E ++   D +K
Sbjct: 298 GKSGRVFGNMMGFMVSVKGIPSTYNKDLQEDKEPLFDSSK 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,606
Number of Sequences: 5004
Number of extensions: 40781
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 619568602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)