Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L13
         (1159 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical ...   114   1e-25

>AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical
           protein Y66H1A.4 protein.
          Length = 244

 Score =  114 bits (275), Expect = 1e-25
 Identities = 52/101 (51%), Positives = 68/101 (67%)
 Frame = +3

Query: 285 DAGPPEAVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIFLENKEQIGKIDEIFGNLRDYF 464
           D GPPE V+ +G +    QDD+VC      +PYFNAPI+ +NKEQ+GKIDEIFG+  +  
Sbjct: 53  DQGPPEEVVLVGVFSHQCQDDIVCNNTSGKIPYFNAPIYFKNKEQVGKIDEIFGSPGENG 112

Query: 465 VSVKLGENIKAKSFKEGQQFFIDPAKLLPLKRFLPQPPGAK 587
            SV L + +KA SF+   Q +IDP KLLP+ RFLPQ  G +
Sbjct: 113 FSVTLSQGVKASSFEPESQLYIDPGKLLPVDRFLPQAGGGR 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,966,105
Number of Sequences: 27780
Number of extensions: 231620
Number of successful extensions: 608
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3151206316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)