Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L12
         (1196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.42 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.55 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.97 
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   6.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.42
 Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
 Frame = -3

Query: 714 PPPPPFXXXXPFGXPFXKXFXXXXPPFXGXXXXPP---XGGXXPPPPP 580
           PPPPP     P   P         P   G    PP     G  PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 8/54 (14%)
 Frame = -3

Query: 717 PPPPPPFXXXX---PFGXPFXKXFXXXXPP-----FXGXXXXPPXGGXXPPPPP 580
           PPPPPP        P G           PP       G    PP G   PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 18/48 (37%), Positives = 18/48 (37%)
 Frame = +1

Query: 574 GXGGGGGXXPPXGGGXGXPXKRGGXPXKXFXKRGPKXGXXXKXGGGGG 717
           G GGG G  PP  GG G     GG         G   G     GG GG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239



 Score = 29.1 bits (62), Expect = 1.3
 Identities = 24/72 (33%), Positives = 25/72 (34%)
 Frame = +1

Query: 502 PPXGXGGXFLGAXXXXXXKKTXXXGXGGGGGXXPPXGGGXGXPXKRGGXPXKXFXKRGPK 681
           PP G GG   G       +     G GG GG     GG  G P   GG P       G  
Sbjct: 200 PPPGPGG--FGGFGGFGGEGHHHGGHGGFGGGP---GGFEGGPGGFGGGPGGFGGGLGGF 254

Query: 682 XGXXXKXGGGGG 717
            G     GGG G
Sbjct: 255 GGGPGGFGGGPG 266



 Score = 27.5 bits (58), Expect = 3.9
 Identities = 22/74 (29%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
 Frame = +1

Query: 499 PPPXGXGGXFLGAXXXXXXKKTXXXGXGGGGGXXPPXGGGXGXPXKRGGXPX-KXFXKRG 675
           P   G GG  LG                 GGG     GG  G P   GG      F   G
Sbjct: 158 PVAAGLGGLALGGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEG 217

Query: 676 PKXGXXXKXGGGGG 717
              G     GGG G
Sbjct: 218 HHHGGHGGFGGGPG 231


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/46 (32%), Positives = 16/46 (34%)
 Frame = +2

Query: 581 GGGGGXXPPXGGXXXXPXKGGXXXKKXFXKGXPXGXXXXXGGGGGG 718
           GG GG     GG        G    +    G P G     GGGG G
Sbjct: 137 GGMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGGAG 182


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -1

Query: 344 PPFFXGXPPPPXXFFFXXGPXPPPXGG 264
           PP     PPPP  F     P PPP  G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 947 PPPXGXXPPGXFXXXPPPPXG 885
           PPP G  PP      PPPP G
Sbjct: 13  PPPPGFEPPS--QPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.151    0.497 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,360
Number of Sequences: 5004
Number of extensions: 32277
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)