Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L11
         (1200 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   2.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   6.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   6.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   6.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   7.9  

>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 502 PHVHMLRSGERRGPLGSRRPEVRPGELHLP 591
           PH H       + P G RR   RPG +  P
Sbjct: 24  PHQHQHYGAAVQVPQGGRRRAARPGVVTTP 53


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 238 PRCPPNCSARVDEAFPTAGHSYSK 309
           P   PNC  +     P +GH  S+
Sbjct: 137 PNVTPNCDVKSSVCSPGSGHQDSR 160


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 238 PRCPPNCSARVDEAFPTAGHSYSK 309
           P   PNC  +     P +GH  S+
Sbjct: 137 PNVTPNCDVKSSVCSPGSGHQDSR 160


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 238 PRCPPNCSARVDEAFPTAGHSYSK 309
           P   PNC  +     P +GH  S+
Sbjct: 137 PNVTPNCDVKSSVCSPGSGHQDSR 160


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 493 PGNVCRVCPG 464
           PG  C+ CPG
Sbjct: 101 PGRCCKTCPG 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,630
Number of Sequences: 336
Number of extensions: 4272
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 34938740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)