Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L11
         (1200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    27   3.9  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   5.2  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    27   6.8  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    26   9.0  

>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +3

Query: 195 SALRSXVLKWRLDAAALPTKLLCEGRRSLPHSWPLLLQRSARSWSAALLCASRSTCT 365
           S L +  + + LD+++   + +    R    SW  LLQ  AR+W   L  AS+++ T
Sbjct: 147 SNLANPPIDYFLDSSSTVIQRILPAIREHGISWSWLLQLIARTWMNTLKIASQASKT 203


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 596 DYEKAVSDRFPGCMKGRTMYVIPFSMGPVGSPL 694
           D+EK  S R   C+KG T YV      P+G+ L
Sbjct: 124 DFEKRCSVR---CLKGHTNYVSSIDFNPLGTLL 153


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 474 TRQTLPGLNPARSYAPIGRATWSP 545
           T Q+ P  NPA   +P+G A+ SP
Sbjct: 343 TPQSSPNFNPAMRRSPVGAASRSP 366


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 90  RSHFXXKLSRV-SPFAALINXQRKL 161
           R++F  KLS + S  AAL+N QRKL
Sbjct: 507 RNNFLQKLSTLDSSLAALVNVQRKL 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,900,128
Number of Sequences: 5004
Number of extensions: 70406
Number of successful extensions: 195
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)