Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_L11
(1200 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0140 - 23073032-23073130,23073270-23073338,23073448-230735... 34 0.26
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784 33 0.34
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 33 0.59
02_05_0464 - 29256887-29257765,29258455-29258538 30 4.2
01_06_1315 + 36226262-36226533,36227946-36228060,36228710-362287... 30 4.2
01_01_0070 - 542603-542686,542803-543441 29 5.5
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 29 7.3
05_05_0142 - 22673607-22674134 29 7.3
01_06_0640 + 30779457-30779623,30779707-30779828,30779959-307800... 29 7.3
11_03_0010 - 8922361-8922375,8923888-8924610 29 9.6
07_01_0636 + 4761858-4762421,4763596-4763819,4763961-4764309,476... 29 9.6
04_04_0462 + 25393733-25394347 29 9.6
>04_04_0140 -
23073032-23073130,23073270-23073338,23073448-23073539,
23073637-23074550,23074646-23074779,23075003-23075058,
23077556-23077646
Length = 484
Score = 33.9 bits (74), Expect = 0.26
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 345 HRAALRSTNARTFGVRVASCGEGFVDPRRAVWWAARLH 232
HR+ L + V GEG +PRRA WW A H
Sbjct: 35 HRSDLSMVTSSVLPKVVDDAGEGEANPRRAKWWYATFH 72
>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
Length = 394
Score = 33.5 bits (73), Expect = 0.34
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = +3
Query: 489 PGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRP 611
P PA S A + AT SPR A +PPW T PP I P
Sbjct: 91 PMPTPAASSA-LAPATSSPRPASPPTPPWTTAPPPGIAAPP 130
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 32.7 bits (71), Expect = 0.59
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 543 PRLAPARSPPWGTTSPPRITRRPCPTD 623
P++ P SPP T SPP IT P P D
Sbjct: 616 PKITPYPSPPEVTPSPPEITPYPSPPD 642
Score = 29.9 bits (64), Expect = 4.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 543 PRLAPARSPPWGTTSPPRITRRPCPTD 623
P + P SPP T SPP IT P P +
Sbjct: 584 PEITPYPSPPEITPSPPEITPYPSPPE 610
Score = 29.5 bits (63), Expect = 5.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 543 PRLAPARSPPWGTTSPPRITRRPCPTD 623
P +AP SPP SPP IT P P +
Sbjct: 444 PEIAPYPSPPEIVPSPPEITPYPSPPE 470
Score = 29.1 bits (62), Expect = 7.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 543 PRLAPARSPPWGTTSPPRITRRPCPTD 623
P + P SPP SPP+IT P P +
Sbjct: 600 PEITPYPSPPEVVPSPPKITPYPSPPE 626
Score = 28.7 bits (61), Expect = 9.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 543 PRLAPARSPPWGTTSPPRITRRPCPTD 623
P + P SPP T PP IT P P +
Sbjct: 568 PEITPYPSPPEVTPGPPEITPYPSPPE 594
>02_05_0464 - 29256887-29257765,29258455-29258538
Length = 320
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -3
Query: 619 VGHGLLVIRGGDVVPQGGLLA---GASRGDHVALPIGA 515
+G G++ I GG V L A A GDH+ALP GA
Sbjct: 220 MGAGMMGIGGGGVAEYHALSALRFAAGLGDHLALPFGA 257
>01_06_1315 +
36226262-36226533,36227946-36228060,36228710-36228752,
36229953-36230329,36230330-36230481,36230591-36230838,
36230919-36231047,36231130-36231739,36231842-36232086,
36232195-36232325
Length = 773
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +3
Query: 465 PGQTRQTLPGLNPARSYAPIGRATWSPRLA---PARSPPWGTTSPPRITRRPC 614
P T + + L P A G W+ +A PA PP +SPP + PC
Sbjct: 170 PSATTKPVQKLRPGSRTAWAGHPKWALPVAYEMPAPPPPHAASSPPLPSSSPC 222
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 29.5 bits (63), Expect = 5.5
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 483 TLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRPCP 617
T P +P P AT +P +APA++PP P P P
Sbjct: 43 TAPAKSPPAPATPAPTATPTPPVAPAKAPPVAPAVAPVTPPPPTP 87
>10_01_0217 +
2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 29.1 bits (62), Expect = 7.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 617 DRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVY 739
D F +K R V PVG P+ K+G E+ S VY
Sbjct: 567 DSFDLPIKSRQEMVFSDEYKPVGKPIKKVGAELQASGEAVY 607
>05_05_0142 - 22673607-22674134
Length = 175
Score = 29.1 bits (62), Expect = 7.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 264 EGRRSLPHSWPLLLQRSARSWSAALLCAS 350
+GRR P SW + RS R WS L AS
Sbjct: 39 DGRRCRPVSWIPVSGRSGRRWSTVQLSAS 67
>01_06_0640 +
30779457-30779623,30779707-30779828,30779959-30780014,
30780147-30780254
Length = 150
Score = 29.1 bits (62), Expect = 7.3
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +3
Query: 468 GQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRR 608
G R+ L GL A S + +P A ARSP S PR TRR
Sbjct: 6 GGARRALAGLRSASSSRAFSQP--APAAAAARSPELAAFSLPRSTRR 50
>11_03_0010 - 8922361-8922375,8923888-8924610
Length = 245
Score = 28.7 bits (61), Expect = 9.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 568 GLLAG--ASRGDHVALPIGAY-ERAGFNPGNVC 479
G AG A D A IGAY AG+NPG +C
Sbjct: 61 GAAAGMAADAADSAAANIGAYIPEAGYNPGKLC 93
>07_01_0636 +
4761858-4762421,4763596-4763819,4763961-4764309,
4764648-4765331
Length = 606
Score = 28.7 bits (61), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 492 GLNPARSYAPIGRATWSPRLAPARSPPWG 578
G++P+R A +P LAPA +P WG
Sbjct: 163 GVSPSRVAVTAAAAEPTPALAPAPAPEWG 191
>04_04_0462 + 25393733-25394347
Length = 204
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 580 VPQGGLLAGASRGDHVALPIGAYERAGFNPGNVCRVC 470
VP GG G G H + +Y A G+V RVC
Sbjct: 96 VPPGGKAGGVCLGGHSVAAVVSYGGAFLGEGSVGRVC 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,799,812
Number of Sequences: 37544
Number of extensions: 595140
Number of successful extensions: 2061
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2058
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3666490380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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