Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L10
         (1174 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    31   2.1  
AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical ...    29   4.8  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 670 YKXTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFL 786
           Y+  R+F +E    ALL +   +P+TC   +  E W FL
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFL 109


>AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical
           protein M151.1 protein.
          Length = 402

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 16/73 (21%), Positives = 28/73 (38%)
 Frame = -2

Query: 891 YRIRRSGRAERGVXAHSPGWSXRPTPNXDTYSVXYEKAPRFPKGERRTGIR*AAGSEQES 712
           +R RR     +    H   W+ R  P    ++    K  ++ K E + G     G+E+  
Sbjct: 81  FRYRRMVFGAKDQLKHDKAWNNRSLPQKSRWNQASVKLAQYQKAEEKMGFIKVFGTEEFQ 140

Query: 711 ARGSFQGETPGXF 673
                +G+T   F
Sbjct: 141 NYSKRRGQTRNSF 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,304,724
Number of Sequences: 27780
Number of extensions: 254303
Number of successful extensions: 490
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3203378606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)