Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L08
         (1168 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...   103   5e-23
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...   102   8e-23
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    29   0.94 

>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score =  103 bits (247), Expect = 5e-23
 Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
 Frame = +3

Query: 138 GRSAGRKALVVKHSAAGPSDKPXGHAFVAGLXRSPRKVHKRLGKHQIHKRSKLKPFVKVV 317
           GR AG+K +++++   G    P GHA VAG+ R P KV K +G  +I KRS++KPF+KV+
Sbjct: 16  GRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVI 75

Query: 318 NYNHLMPTRYTVDFSFEKFSXXXXXXXXXXXXXXFNTRVR--FEXRYKSGKNKWFFQKLR 491
           NYNHLMPTRY ++    K                    V+  FE +Y++GK+ WFF  LR
Sbjct: 76  NYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLR 135

Query: 492 F 494
           F
Sbjct: 136 F 136


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score =  102 bits (245), Expect = 8e-23
 Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
 Frame = +3

Query: 138 GRSAGRKALVVKHSAAGPSDKPXGHAFVAGLXRSPRKVHKRLGKHQIHKRSKLKPFVKVV 317
           GR AG+K ++++    G    P GHA VAG+ R P KV K +G  +I +RS++KPF+KVV
Sbjct: 16  GRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVV 75

Query: 318 NYNHLMPTRYTVDFSFEK--FSXXXXXXXXXXXXXXFNTRVRFEXRYKSGKNKWFFQKLR 491
           NYNHLMPTRY ++    K   +                 +  FE +Y+SGK+ WFF  LR
Sbjct: 76  NYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLR 135

Query: 492 F 494
           F
Sbjct: 136 F 136


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 264 GKHQIHKRSKLKPFVKVVNYNH 329
           G H I  R K  P  K+VNYNH
Sbjct: 28  GNHWIFARFKFYPLNKIVNYNH 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,055
Number of Sequences: 5004
Number of extensions: 41603
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)