Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L08
         (1168 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0951 - 21769342-21769752                                        104   1e-22
02_02_0470 - 10700092-10700505                                        103   3e-22
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417...    30   3.1  
01_06_0352 + 28638453-28639391,28639486-28640034,28640388-286411...    30   4.0  
09_02_0236 - 6131072-6131639,6132047-6132180                           29   5.3  
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275...    29   7.1  

>10_08_0951 - 21769342-21769752
          Length = 136

 Score =  104 bits (250), Expect = 1e-22
 Identities = 50/121 (41%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
 Frame = +3

Query: 138 GRSAGRKALVVKHSAAGPSDKPXGHAFVAGLXRSPRKVHKRLGKHQIHKRSKLKPFVKVV 317
           GR AGRKA++V+    G  D+P GH  VAGL + P+KV ++    +  K+S++K F+K+V
Sbjct: 16  GRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLV 75

Query: 318 NYNHLMPTRYTVDFSFEKFSXXXXXXXXXXXXXXF--NTRVRFEXRYKSGKNKWFFQKLR 491
           N+ HLMPTRYT+D   ++ +                 + + R E R+K+GKN+WFF KLR
Sbjct: 76  NFTHLMPTRYTLDVDLKEVAAGPDALATRDKKVAACKSAKARLEDRFKTGKNRWFFTKLR 135

Query: 492 F 494
           F
Sbjct: 136 F 136


>02_02_0470 - 10700092-10700505
          Length = 137

 Score =  103 bits (247), Expect = 3e-22
 Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
 Frame = +3

Query: 138 GRSAGRKALVVKHSAAGPSDKPXGHAFVAGLXRSPRKVHKRLGKHQIHKRSKLKPFVKVV 317
           GR AGRKA++V+    G  D+P GH  VAGL + P+KV ++    +  K+S++K F+K+V
Sbjct: 16  GRYAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLV 75

Query: 318 NYNHLMPTRYTVDFSFEKFSXXXXXXXXXXXXXXF---NTRVRFEXRYKSGKNKWFFQKL 488
           N+ H+MPTRYT+D  F+  +                    + R E R+K+GKN+WFF KL
Sbjct: 76  NFTHIMPTRYTLDVDFKDVASGGPDALATRDKKVAACKAAKARLEERFKTGKNRWFFTKL 135

Query: 489 RF 494
           RF
Sbjct: 136 RF 137


>02_01_0567 -
           4168164-4168250,4168672-4168828,4168951-4169090,
           4170318-4170456,4170562-4170830,4170914-4171000,
           4171259-4171327,4171427-4171455,4171544-4171950,
           4172906-4172977,4173150-4173221,4173299-4173370,
           4173454-4173519,4173717-4173785,4173866-4173995,
           4174846-4174975
          Length = 664

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 21/73 (28%), Positives = 28/73 (38%)
 Frame = +1

Query: 22  GLLSSXXGWPFSVHAFXGLLPPSXGXXIAAGSXRAGPSVAGPRVARLSXSSIPPQVPPTS 201
           G L+    +  S + F G LPPS G   +  + + G           S SS P    PT 
Sbjct: 172 GSLTGLVNFDISSNNFSGSLPPSLGSLSSLTTLKDGNPFNTSIAPSASPSSTPTGSTPTQ 231

Query: 202 HXGMPSSLVSXGP 240
               PSS  +  P
Sbjct: 232 TPSSPSSSGTPSP 244


>01_06_0352 +
           28638453-28639391,28639486-28640034,28640388-28641195,
           28641279-28641389,28641556-28641683
          Length = 844

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 82  PPSXGXXIAAGSXRAGPSVAGPRVARLSXSSIPPQVPPTSHXGMPSSLVSXGP-PGKCTS 258
           P S G  + AG   AGPS A PR  +L+  ++  +     + G  S +   GP  G  +S
Sbjct: 88  PRSLG--VRAGRGGAGPSRAAPRARQLNFGAVGGRAGHGGNGGSSSGIGGGGPGRGSSSS 145

Query: 259 G 261
           G
Sbjct: 146 G 146


>09_02_0236 - 6131072-6131639,6132047-6132180
          Length = 233

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 164 RXQAFRRRSLRQAXRACLRRWSRQVPPESAQAAGXASNPQAVQAKAFRQGCK 319
           R +  RRR +R    +  RRW+R  PP+   AA  A+      A   R+G K
Sbjct: 160 RRRIHRRRKVRGGGGS-RRRWTRLPPPDLPAAATDAATVAGSAAGGRREGAK 210


>05_01_0351 +
           2750253-2751042,2751951-2751958,2752122-2752149,
           2754692-2754775,2755780-2757548
          Length = 892

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 150 GRKALVVKHSAAGPSDKPXGHAFVAGLXRSPRKVHKRLGKHQIHKRSKLK 299
           G+K    K  AA P D     A VAG+ R+P    + L   +  K +K+K
Sbjct: 407 GQKPPAKKKPAARPGDTTAASAKVAGVKRAPSDRQEELATKKKAKLNKIK 456


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,620,846
Number of Sequences: 37544
Number of extensions: 326329
Number of successful extensions: 1009
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3561544780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)