Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_L08
(1168 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 126 4e-29
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 126 4e-29
U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon gu... 33 0.29
U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon gu... 33 0.29
AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr pro... 33 0.29
Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kin... 32 0.68
AL032637-6|CAA21620.2| 422|Caenorhabditis elegans Hypothetical ... 29 6.3
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 126 bits (303), Expect = 4e-29
Identities = 61/121 (50%), Positives = 79/121 (65%), Gaps = 2/121 (1%)
Frame = +3
Query: 138 GRSAGRKALVVKHSAAGPSDKPXGHAFVAGLXRSPRKVHKRLGKHQIHKRSKLKPFVKVV 317
G+ AGRKA+VVK G SD+ HA +AG+ R P KV K +GK +I KR+KLKPF+KVV
Sbjct: 16 GKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVV 75
Query: 318 NYNHLMPTRYTVDFSFEK--FSXXXXXXXXXXXXXXFNTRVRFEXRYKSGKNKWFFQKLR 491
+Y HL+PTRY+VD +F+K + + +FE RYK+GKNKWFF KLR
Sbjct: 76 SYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLR 135
Query: 492 F 494
F
Sbjct: 136 F 136
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 126 bits (303), Expect = 4e-29
Identities = 61/121 (50%), Positives = 79/121 (65%), Gaps = 2/121 (1%)
Frame = +3
Query: 138 GRSAGRKALVVKHSAAGPSDKPXGHAFVAGLXRSPRKVHKRLGKHQIHKRSKLKPFVKVV 317
G+ AGRKA+VVK G SD+ HA +AG+ R P KV K +GK +I KR+KLKPF+KVV
Sbjct: 16 GKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVV 75
Query: 318 NYNHLMPTRYTVDFSFEK--FSXXXXXXXXXXXXXXFNTRVRFEXRYKSGKNKWFFQKLR 491
+Y HL+PTRY+VD +F+K + + +FE RYK+GKNKWFF KLR
Sbjct: 76 SYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLR 135
Query: 492 F 494
F
Sbjct: 136 F 136
>U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform a protein.
Length = 476
Score = 33.5 bits (73), Expect = 0.29
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +3
Query: 153 RKALVVKHSAAGPSDKPXGHAFVAGLXRSPRKVHKRLGKHQIHKRSKLKPFVKVVNYNHL 332
RK + + + PSD P A + R + +RLG H K PFVK +++NH+
Sbjct: 330 RKVINWQQTLVFPSDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHI 389
Query: 333 M----PTRYTV 353
P R TV
Sbjct: 390 RERPPPIRVTV 400
>U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform b protein.
Length = 474
Score = 33.5 bits (73), Expect = 0.29
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +3
Query: 153 RKALVVKHSAAGPSDKPXGHAFVAGLXRSPRKVHKRLGKHQIHKRSKLKPFVKVVNYNHL 332
RK + + + PSD P A + R + +RLG H K PFVK +++NH+
Sbjct: 330 RKVINWQQTLVFPSDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHI 389
Query: 333 M----PTRYTV 353
P R TV
Sbjct: 390 RERPPPIRVTV 400
>AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr
protein kinase protein.
Length = 469
Score = 33.5 bits (73), Expect = 0.29
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +3
Query: 153 RKALVVKHSAAGPSDKPXGHAFVAGLXRSPRKVHKRLGKHQIHKRSKLKPFVKVVNYNHL 332
RK + + + PSD P A + R + +RLG H K PFVK +++NH+
Sbjct: 323 RKVINWQQTLVFPSDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHI 382
Query: 333 M----PTRYTV 353
P R TV
Sbjct: 383 RERPPPIRVTV 393
>Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kinase
protein.
Length = 404
Score = 32.3 bits (70), Expect = 0.68
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +3
Query: 153 RKALVVKHSAAGPSDKPXGHAFVAGLXRSPRKVHKRLGKHQIHKRSKLKPFVKVVNYNHL 332
RK + + + PSD P A + R + +RLG H K PFVK +++NH+
Sbjct: 272 RKVINWQQTLVFPSDVPISIEAKATIKRFCCERERRLGNHGGLDEIKQCPFVKRIDWNHI 331
Query: 333 M----PTRYTV 353
P R TV
Sbjct: 332 RERPPPIRVTV 342
>AL032637-6|CAA21620.2| 422|Caenorhabditis elegans Hypothetical
protein Y43F8C.6 protein.
Length = 422
Score = 29.1 bits (62), Expect = 6.3
Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
Frame = +3
Query: 60 PRVXGPSPSKSGXXHCXRVXSCWSFSGRSAGRKALVVKHSAAGPSDKPXGHAFVAGLXRS 239
P PS G H R+ S SG AG SA GPS A L +
Sbjct: 238 PSSISGGPSAGGSHHPKRM--AMSSSGGGAGASG--PSSSAPGPSSSYSTGAGGGALLST 293
Query: 240 PRKVH-KRLGKHQIHKRSKLKPFVKVVNYNHLMPTRYTV 353
V G HKR ++P K+V ++PTRYTV
Sbjct: 294 GHAVPIMGAGGTGGHKRI-MQPIGKMVATRAVIPTRYTV 331
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,098,962
Number of Sequences: 27780
Number of extensions: 265112
Number of successful extensions: 625
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3182509690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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