Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L07
         (1205 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz...    33   0.10 
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    30   0.56 
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    30   0.74 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   3.9  
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    27   3.9  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    26   9.1  

>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 32.7 bits (71), Expect = 0.10
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
 Frame = +3

Query: 738 IVVFDLNTDRE--LFRYQFKSSDIPAENTPTGLASVTIDTKS----GCDTAHAYVPDLTT 899
           + VFD +T R   L+R Q +S   P   T   L   T+DT       C     YV + ++
Sbjct: 84  LTVFDPDTPRAPVLWRIQLRSGLFP---TTKILQMETMDTFRTYFFNCLKESDYVRNGSS 140

Query: 900 YGIIVYSLRDNDS-WR--ISHSYFHFNPIA 980
            GII  S  + D+ W   ++H Y+ F PIA
Sbjct: 141 SGIIALSKAETDTYWNAILNHDYYDFRPIA 170


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 538 GTPYLRLGTVMNNLSPTFSTPIGTLLY*TKNLPVSFSTGFTN 413
           G+P+ +   V NN S TF   + T L+ +KN   SF+  F+N
Sbjct: 112 GSPFYKNPVVANNPSSTFD--MSTNLFNSKNANTSFTNAFSN 151


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 518 RDCNEQSVANLFNAHWHIVILNEESSCFVLDRLHE 414
           R+ N Q++ N F+A WH+++    S     DR HE
Sbjct: 716 REFNRQTLRNAFDA-WHLLMFRVTSLVMQADRFHE 749


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 675 WMVDTGRLEIPDNHQQVQPPAIVVFDLNTDRELF 776
           W  D+G +++ DN   + PPA+ +     D  +F
Sbjct: 137 WRADSGVVQVIDNIIDLPPPALEILSSEKDFSIF 170


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 738 IVVFDLNTDRELFRYQFKSSDIPAENTPTGLASVTID-TKSGCDTA 872
           I+  D+N D+E++  +F ++D    +    L    ID T  G D A
Sbjct: 221 IIAIDINADKEVYAKKFGATDFIDSSKVKDLVQYVIDVTDGGVDYA 266


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 450 FVQYNNVPMGVEKVGDRLF 506
           F QYNNVP+G++ V + ++
Sbjct: 272 FEQYNNVPLGIKGVIEAIY 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,835,500
Number of Sequences: 5004
Number of extensions: 77042
Number of successful extensions: 223
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 651443514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)