Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L06
         (1216 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0661 + 5596739-5597047,5597125-5597703                           29   5.6  
11_05_0097 - 19036044-19036358,19036502-19036585,19036772-190376...    29   7.4  
03_01_0482 - 3686954-3688564                                           29   7.4  

>12_01_0661 + 5596739-5597047,5597125-5597703
          Length = 295

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 498 EFNTQEFKIVCRCYGEEFVIGKHPQGTEVKAITYSAMQI 614
           E+N +  KI+C  Y E+   G  P  T + +I YS + +
Sbjct: 6   EWNDENTKIICELYAEQVRAGNRP-STHLNSIGYSQVAL 43


>11_05_0097 -
           19036044-19036358,19036502-19036585,19036772-19037644,
           19038059-19038157
          Length = 456

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 56  LQGSARVAXFLSLLKLSAQCRSXSQRLCXSTHLXVKFCYIIK 181
           L     V  +LSL + S Q RS  Q+LC   +L V+ C + K
Sbjct: 213 LLSHCNVLEWLSLTQCSLQHRSICQKLCRLRYLCVRKCRLQK 254


>03_01_0482 - 3686954-3688564
          Length = 536

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 18  TXAFFX-LRVASSFFKAARAWXXFCRCSNCLLNA 116
           T A+F  L  AS   +AARAW   C+C  C   A
Sbjct: 353 TFAYFDVLTPASKRREAARAWGLECQCDRCRFEA 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,522,349
Number of Sequences: 37544
Number of extensions: 320959
Number of successful extensions: 606
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3724688640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)