Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_L03
(1160 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 35 0.025
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 31 0.40
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 29 1.6
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 29 1.6
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 3.8
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 27 3.8
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 27 5.0
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo... 27 6.6
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 8.7
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 8.7
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 34.7 bits (76), Expect = 0.025
Identities = 20/93 (21%), Positives = 46/93 (49%)
Frame = +3
Query: 456 LSTTKPTPLIQSRKAEAMQNVHKEINDHFAHLKKQYKIKTSKFTPVQQALIASLNSTITE 635
L+T++ + L + A + + K I++ L+K Y++ ++ T +Q++L ++E
Sbjct: 617 LATSRSSILSHNSSAGNIDDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQDLLSE 676
Query: 636 LENIWNTVDNWVDNESLFPDKNGDPGRILHAIK 734
+E I ++N + L D+ + + A K
Sbjct: 677 MEAIRKELENSKYQQQLSTDRLTNANNDVEAFK 709
Score = 27.5 bits (58), Expect = 3.8
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +3
Query: 510 QNVHKEINDHFAHLKKQYKIKTSKFTPVQ------QALIASLNSTITELENIWNTVDNWV 671
+N+ +E+N HLK + + SK ++ Q+ I L T+L W T V
Sbjct: 1330 ENLIEELNQEIGHLKSELETVKSKSEDLENERAQNQSKIEQLELKNTKLAAAWRTKYEQV 1389
Query: 672 DNESL 686
N+SL
Sbjct: 1390 VNKSL 1394
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 30.7 bits (66), Expect = 0.40
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Frame = -2
Query: 907 ANTSELYLSKPAYTGPLITSVKLYLFGLNKTFCLLSKISNSFNCVPFGALSTSAIGEDFI 728
A+T++ KPA T + + L GLNK+F + + S + PFG LS E
Sbjct: 72 ASTTQFTFGKPAVTANNDSDIHLKKRGLNKSF--IDAVIKSVDNNPFGNLS-PLFDEYRQ 128
Query: 727 A*SILPGSPFLSGNRDSLSTQ-LSTVF--QIFSNSVMVELS 614
S + P GN +ST LS VF Q SN+V+ E++
Sbjct: 129 HFSSIEKKP-AEGNAFIVSTSFLSNVFLEQPTSNAVVSEVN 168
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 561 YKIKTSKFTPVQQALIASLNSTITELENIWNT 656
Y +K T ++ + LNST+ E++N+WN+
Sbjct: 635 YVVKRHNCTVRVESPVNELNSTMEEVKNVWNS 666
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 28.7 bits (61), Expect = 1.6
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Frame = +3
Query: 522 KEINDHFAHLKKQYKIKTSKFTPVQQALIASLNSTITELENIWNTVDNWVDNES-----L 686
+++ + AHLKK+ + SKF SL S+ T+L++ T+ ++ E+ +
Sbjct: 129 RKLEEEMAHLKKKCNVYKSKFEE-SSLRCKSLYSSNTKLKDSMETMKRRMETETKEMNKI 187
Query: 687 FPDKNGDPGRILHAIKS----SPIALV---DNAPKGTQLKLLLILESKQKVLFKP 830
P + + R +S SP+ V DN+ T L + K K +FKP
Sbjct: 188 KPKNDSESDRFKRNSQSLSQQSPLLDVHSPDNSNHRTMLNINNSSPIKPKKIFKP 242
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 3.8
Identities = 21/68 (30%), Positives = 27/68 (39%)
Frame = +3
Query: 492 RKAEAMQNVHKEINDHFAHLKKQYKIKTSKFTPVQQALIASLNSTITELENIWNTVDNWV 671
RK + + HK N K K P + A A + ELEN V+N V
Sbjct: 352 RKVDKSEMTHKNPNLRKTGPTPGPKPKIKSSAPSKPAETAPVKPPRIELENTKWFVENQV 411
Query: 672 DNESLFPD 695
DN S+ D
Sbjct: 412 DNHSIVLD 419
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 892 LYLSKPAYTGP-LITSVKLYL-FGLNKTFCLLSKISNSFNCVPFGALST 752
LY S Y+ +I+ +++ GLN CL I+N+ + FG+L T
Sbjct: 22 LYSSANVYSATVMISQSPVHITIGLNVCLCLFFAIANALKTLLFGSLQT 70
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 27.1 bits (57), Expect = 5.0
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = -2
Query: 823 NKTFCLLSKISNSFNCVPFGALSTSAIGEDFIA*SILPGSPFLSGNRDSLSTQLSTV 653
N++ +LS +SNS + GAL++ + + I + + L + +STQL++V
Sbjct: 357 NQSLSMLSSLSNSMSSTSNGALNSPSYSQAAIPNTNSSLTSILQSDSLMISTQLTSV 413
>SPBC1711.13 |his2||histidinol dehydrogenase His2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 26.6 bits (56), Expect = 6.6
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +3
Query: 717 ILHAIKSSPIALVDNAPKGTQLKLL-----LILESKQKVLFKPKRYNLTEVIKGP 866
I HAIK S I VDN + + L L+L K + PK N V GP
Sbjct: 307 IKHAIKKSVIVQVDNVDQAFEWSNLYGPEHLVLHLKNASSYIPKIDNAGSVFVGP 361
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -1
Query: 866 WSFDNLSQIIPFWFKQNLLFT 804
W + +SQ+I F+F +N+++T
Sbjct: 1084 WDYKRMSQMISFFFYKNVIWT 1104
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 637 NSVMVELSDAIRACCTGVNLDVLILYCF 554
+S +V+ A+R C+GVN LI + F
Sbjct: 819 SSTVVDCVSAVREACSGVNCHDLIYHVF 846
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,180,014
Number of Sequences: 5004
Number of extensions: 80447
Number of successful extensions: 233
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 621560784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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