Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L03
         (1160 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0118 + 31795050-31796404,31796513-31797083                       31   1.7  
06_01_1195 + 10280864-10280979,10281024-10281115,10281211-102821...    30   4.0  
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078...    29   5.3  
08_01_0420 + 3726392-3727116,3727450-3727648,3727787-3727879,372...    29   5.3  
04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964     29   5.3  
10_02_0105 - 5345149-5347833                                           29   9.3  
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925           29   9.3  

>03_06_0118 + 31795050-31796404,31796513-31797083
          Length = 641

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 837 YNLTEVIKGPVYAGXDRYNSEVXA--YYLGMVXNMRWIAPAVPMRIMSKM 980
           YNL++V+  PVY G       V +  Y LG    M   APA+ + ++ K+
Sbjct: 234 YNLSQVLVDPVYVGFSSATGTVRSRHYVLGWSFAMDGPAPAIDIAMLPKL 283


>06_01_1195 +
           10280864-10280979,10281024-10281115,10281211-10282156,
           10282378-10283075,10283140-10284068
          Length = 926

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +3

Query: 531 NDHFAHLKKQYKIKTSKFTPVQQALIASLNST--ITELENIWNTVD--NWVDNESLFPDK 698
           N+HF  L+   +    K   + + L   L        L+++W+ +D  NW+ NES+FPD 
Sbjct: 271 NEHFKGLQSMQR--NEKVEDLVEDLKQGLKEKRYFVVLDDMWS-IDALNWL-NESVFPDS 326

Query: 699 NGDPGRILHAIKSSPI 746
           N    RI+   + + I
Sbjct: 327 NNGGSRIIVTTRDASI 342


>08_02_1332 +
           26207164-26207257,26207454-26207530,26207771-26207841,
           26208448-26208502,26209066-26209187,26209272-26209353,
           26210070-26210160,26210759-26210982,26211294-26211413,
           26211523-26211705
          Length = 372

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +3

Query: 435 NIYFFYNLSTTKPTPLIQSRKAEAMQNVHKEINDHFAHLKKQYKIKTSKFTPVQQALIAS 614
           ++YF  +L TT  T L    K        +++ D   +LKK YK  T+K T   Q L+  
Sbjct: 229 HLYFSCDLETTFLTFLAPQIKPVEPAVSPEQLRDCLRNLKKNYKDDTTKVTRAFQILLKI 288

Query: 615 LNSTITELE 641
           + + +   E
Sbjct: 289 IANIVKNPE 297


>08_01_0420 +
           3726392-3727116,3727450-3727648,3727787-3727879,
           3728001-3728129,3728445-3728498,3728597-3728674,
           3728773-3728835,3729101-3729213,3729392-3729500
          Length = 520

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 558 QYKIKTSKFTPVQQALIASLNSTITELENIWNTVDNWVD-NESLFPDKNGDPGRILHA 728
           +Y+++     P  + +  SLN +  ++ N    V+  +  ++  FP  NG PG  LH+
Sbjct: 369 KYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHS 426


>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
          Length = 908

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 349 MKYIQIKHVKHKHKLYINNCYRLNSTITNS 260
           +K     H+KH  +L++ +CY LN+ + ++
Sbjct: 665 IKISDFNHMKHLEELHVESCYDLNTLVADT 694


>10_02_0105 - 5345149-5347833
          Length = 894

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 636 LENIWNTVDNWVDNESLFPDKNGDPGRIL 722
           L++IW T D W   +S+FPDK G+  RI+
Sbjct: 281 LDDIWTT-DTWDKIKSVFPDK-GNGSRII 307


>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
          Length = 962

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 555 KQYKIKTSKFTPVQQALIASLNSTITELENIWNTVDNWVDNESLFPDKNGD 707
           K+Y +K S +  V   ++A +     E++ +    D W+    L  +K+ D
Sbjct: 107 KKYVVKGSHYAIVFDGIVAEIVQIEQEIQRVIKLKDKWLQPSQLIRNKHSD 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,489,709
Number of Sequences: 37544
Number of extensions: 447961
Number of successful extensions: 978
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3538190388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)