Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L02
         (1104 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    41   0.049
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    38   0.35 
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    35   4.3  

>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 41.1 bits (92), Expect = 0.049
 Identities = 20/29 (68%), Positives = 22/29 (75%)
 Frame = +2

Query: 488 SVVRXXQXXSXHSXGVIRLSTKSGDNAGK 574
           SVVR  +  S HS  VIRLST+SGDNAGK
Sbjct: 29  SVVRLRRAVSAHSKAVIRLSTESGDNAGK 57


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 38.3 bits (85), Expect = 0.35
 Identities = 34/116 (29%), Positives = 40/116 (34%)
 Frame = +3

Query: 426 RGKAVXXXGALPFPRXXXRCXRSFGXGKXXQXTQXG*YGYPQNXGITQERXCXQKAXKRP 605
           R   +   G +P PR   R  RSFG G+  + T            +   R    K     
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTDG------DGNFLEDTRKTLSK----- 74

Query: 606 XTEKRPXXWXFSIGSAPLXSXXKXXXXXXGGKPXGXIXXPGVXPXXXPXXXXXFXP 773
             E RP    FSIGSAPL S  K      GG+       P   P   P     F P
Sbjct: 75  -EEIRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLP 129


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 34.7 bits (76), Expect = 4.3
 Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 417 ANARGKAVXXXGALPFPRXXXRCXRSFGXGKXXQXTQXG-*YGYPQNXGITQ 569
           A AR +AV    ALP  R   RC RS G G        G  YG PQ  G+ Q
Sbjct: 271 ATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,753,104
Number of Sequences: 1657284
Number of extensions: 3747962
Number of successful extensions: 1931
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1930
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 107747421395
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)