Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_L01
         (1289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    29   1.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   7.4  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 23/93 (24%), Positives = 29/93 (31%), Gaps = 1/93 (1%)
 Frame = +1

Query: 697 PXTPGXXPXTTLLPXPXXXPARTPXXTSVPXPAXXXXGKXTDXSPLPREXXRXXXGXRSX 876
           P T G    +T  P     P  +   TS+P P        T+ +PLP             
Sbjct: 122 PPTGGSSSLST--PITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIP 179

Query: 877 PXPGXKAWGXP-PPTXPRXXXRPXXAPTPXXXT 972
           P  G  +   P  PT P         P P   T
Sbjct: 180 PTGGSSSLSTPITPTVPPTSTSSTSIPIPPTST 212



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 25/93 (26%), Positives = 30/93 (32%), Gaps = 1/93 (1%)
 Frame = +1

Query: 697 PXTPGXXPXTTLLPXPXXXPARTPXXTSVPXPAXXXXGKXTDXSPLPREXXRXXXGXRSX 876
           P T G    +T  P     P  +   TS+P P        T+ SPLP           S 
Sbjct: 179 PPTGGSSSLST--PITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTS-TSI 235

Query: 877 PXPGXKAWGXP-PPTXPRXXXRPXXAPTPXXXT 972
           P  G  +   P  PT P         P P   T
Sbjct: 236 PTGGSSSLSTPITPTVPPTSTSSTSIPIPPTST 268


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = +3

Query: 816 HXPXTATPGXXKVXSXATVXPQXXXKGLGXTPPNXPPXRXPPXXRPN 956
           + P    PG   + S  +V P      L   PPN  P   P   +PN
Sbjct: 103 YRPVQPPPGDNMLESVVSVSPTQMHPSLQGLPPNQHPQMPPSSQQPN 149


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 24/99 (24%), Positives = 27/99 (27%)
 Frame = +3

Query: 732  PXXPXAXPGPXPXXXLXTGXRXXXAXQXHXPXTATPGXXKVXSXATVXPQXXXKGLGXTP 911
            P    A P P P            A     P  A P      S     P    K     P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP----KPAAGVP 1189

Query: 912  PNXPPXRXPPXXRPNPXXXDSGXXXPSPXKXTPPXGGHP 1028
            P  PP   PP  +P+           +P   TP  G  P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.139    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,381
Number of Sequences: 5004
Number of extensions: 26762
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 703461012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)