Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_K21
(1176 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 53 7e-08
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 29 1.7
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 1.7
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 27 3.8
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ... 27 3.8
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1... 27 5.0
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 27 6.7
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 26 8.8
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 26 8.8
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 53.2 bits (122), Expect = 7e-08
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Frame = +1
Query: 148 AWRKHCDIKDVENFLEDQRLEE-RLGKFETKPDSEIFIIDTGGDG--IKTEDKDIKPISL 318
AWRK+ D++D+E+ LE R EE + G E KP+ +F+IDT GD K K IKP+ +
Sbjct: 22 AWRKNIDLEDIESGLEQTRDEEIKGGNVEHKPNDALFVIDTLGDDRIAKRSRKKIKPLKV 81
Query: 319 KKLRRSK 339
++ +K
Sbjct: 82 DQILENK 88
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 391 QDPNTKRNTVKPVGSKPTAFSKLTDKRKYEKGIYQKKIEDARRNRKMALQKKRRAKQ 561
Q N + + +PT ++ T K+K E ++ +E R+ RK ++RR K+
Sbjct: 65 QFENFDESKIGREAEEPTIYNLPTFKKKQEPNTIEENLEVPRKVRKEQKPRRRRGKR 121
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 502 IEDARRNRKMALQKKRRAKQVRQNFNLDLWGKDLPDSKTIPSTLCDEFIP 651
+ED RN+ L +K+ K NLD + D + PS +++ P
Sbjct: 730 LEDVSRNKSQLLAEKKHLKSQLMVANLDTYSLDCYEIHEFPSEWENDYAP 779
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 27.5 bits (58), Expect = 3.8
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 304 KPISLKKLRRSKLGEFPKCFEILLPDSKVQDPNTKRNTVKPVGSKPTAFS-KLTDKRKY 477
K + + K R K+ E K + LL ++ DP TK++ +K + S+ + +L D +K+
Sbjct: 127 KAVEMIKRRDKKVKELEKIQKELLVVYELPDPETKKSKIKALQSQLVRVNGELDDLQKH 185
>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 144
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/47 (25%), Positives = 31/47 (65%)
Frame = +1
Query: 433 SKPTAFSKLTDKRKYEKGIYQKKIEDARRNRKMALQKKRRAKQVRQN 573
SK + +L ++ + ++ I Q+K EDA+ +++ ++KK++ ++ +N
Sbjct: 71 SKKSHLQELYERSEEKRRIQQEK-EDAKVQKRLEIEKKQKDREQTRN 116
>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 27.1 bits (57), Expect = 5.0
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +1
Query: 247 EIFIIDTGGDGIKTEDKDIKPISLKKLRRSKLGEF---PKCFEIL-LPDSKVQDPNTKRN 414
E+F+++ GD I+TE+ LKK + G F K +E L LP +++ + RN
Sbjct: 61 ELFVVEDQGDKIETEETGTCAQQLKKRGWNIAGHFMFSHKIWEDLSLPQNELLESGPNRN 120
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 550 RAKQVRQNFNLDLWGKDLPDSKTIPSTLCDEFIPPQAQLHNV-LPEQRLRQKPPLAQTLV 726
R Q+++ L + GK++ K I + + L +V +PE + + KPPL +
Sbjct: 100 RVPQIKEGELLRISGKEISIEKEISAESYEAGTHIDDSLRDVHMPEMKRKFKPPLRPNTM 159
Query: 727 TRAAVXVPHP 756
+ +P P
Sbjct: 160 YQTISALPKP 169
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 26.2 bits (55), Expect = 8.8
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 370 LLPDSKVQDPNTKRNTVKPVGSKPTAFSKLTDKRKYEKGIYQKKI-EDARRNRKMALQKK 546
++P K + N +RN KPV S +KL + + + + K ++A + + L K
Sbjct: 166 VIPKDKAVENNHQRNAEKPVASDKITDAKLLARLERVRAWKESKAKQEASKKEEHKLNTK 225
Query: 547 RRAKQVRQN 573
+ QN
Sbjct: 226 PQVTAKDQN 234
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 421 KPVGSKPTAFSKLTDKRKYEKGIYQKKIEDARR 519
K +G K T SK+ ++ ++ + QKK++DA R
Sbjct: 304 KELGIKHTPNSKIINQISLQQWVKQKKVQDAWR 336
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,016
Number of Sequences: 5004
Number of extensions: 60203
Number of successful extensions: 210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 631521694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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