Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_K20
         (1215 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    30   0.75 
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    29   1.7  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   2.3  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    27   4.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   6.9  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    27   6.9  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    26   9.2  

>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +2

Query: 695 DNKDSKDSNHQNNTQKSEPETNSPEKEKSNPDLQTHVFQKHDLELLQNAFDLYRSMAEEK 874
           + K++ D + +  + + E    S +  K+N + QT + +K+  ELL N   LY    E  
Sbjct: 617 NTKEALDLSVKERSIQEEKLNESLKTSKTNLEEQTQLAEKYHEELLDNQQKLYDLRIELD 676

Query: 875 Y--ANATKTEAKMTKL 916
           Y  +N  + E +M  L
Sbjct: 677 YTKSNCKQMEEEMQVL 692


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 743 SEPETNSPEKEKSNPDLQTHVFQKHD 820
           SE E +SP K+KS   L T +FQ  D
Sbjct: 143 SEEEIDSPTKKKSFKSLDTSIFQAED 168


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 716 SNHQNNTQKSEPETNSPEKEKSNPDLQTHVFQ 811
           S+H N++ +   +  SP+++ S  D+ THV Q
Sbjct: 421 SSHSNHSNEKFEQIPSPDEKLSRTDIDTHVKQ 452


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 695 DNKDSKDSNHQN--NTQKSEPETNSPEKEKSNPDLQTHVFQKHDLE 826
           D+K+SKD N +N   +  +  ET++PE+E  +   +    +KH ++
Sbjct: 218 DSKESKDENEENKETSTTNVAETDAPEEETVDTVEEIADEEKHSVK 263


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 698 NKDSKDSNHQNNTQKSEPETNSPEKEKSNPDLQTHVFQKHDLELLQNAFDLYRSMAEEKY 877
           +K  KD  H    +  + E +   KEK N   + ++   H+L +++   DL  S+  E+ 
Sbjct: 401 HKGPKDKEHHKGPK--DKEHHQGPKEKHNERPEQNMQSSHELLVIEAFADLINSVPVEEI 458

Query: 878 A 880
           A
Sbjct: 459 A 459


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 473 FDSAIRSRRLVVG*PATRPSVHXLPTCR 390
           F++   SRRLVVG PA+  +++ +PT +
Sbjct: 54  FEAQEFSRRLVVGRPASVSTLYVIPTSK 81


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 433 HPTTKRRDRIAESKTREYSDASIR 504
           HPT +    I   K  EY DAS+R
Sbjct: 432 HPTLRTNSTICLGKIAEYLDASVR 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,519,763
Number of Sequences: 5004
Number of extensions: 60391
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)