Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_K20
         (1215 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0451 + 3194919-3195416,3195560-3195580,3196282-3196467,319...    30   3.2  
06_01_0133 + 1027765-1028430                                           29   5.6  
02_02_0128 - 7043895-7045202                                           29   5.6  
02_02_0130 + 7062063-7063370                                           29   7.4  
01_05_0577 - 23383987-23384097,23384120-23384188,23384217-233843...    29   7.4  

>06_01_0451 +
           3194919-3195416,3195560-3195580,3196282-3196467,
           3197272-3197556
          Length = 329

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 15/66 (22%), Positives = 31/66 (46%)
 Frame = +2

Query: 605 LSTLHSSSCPRSLRNXXXXXXXXXXXXXXXDNKDSKDSNHQNNTQKSEPETNSPEKEKSN 784
           +++L  SS PRS +                 +++S D  +++++ ++ P  NSP +  S+
Sbjct: 10  VTSLAPSSPPRSPKRGGGVGVGGANYYVQSPSRESHDGGYKSSSMQATPVYNSPNESPSH 69

Query: 785 PDLQTH 802
           P    H
Sbjct: 70  PSYGRH 75


>06_01_0133 + 1027765-1028430
          Length = 221

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 488 LYSRVFDSAIRSRRLVVG*PATRPSVHXLPTC 393
           +YSRV+D A+R  R VV  P  +P  H  P C
Sbjct: 189 VYSRVYDIAVRCPR-VVFLPVNQPPPHPPPIC 219


>02_02_0128 - 7043895-7045202
          Length = 435

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 824 ELLQNAFDLYRSMAEEKYANATKTEAKMTKLNH*TELTVLYQIGRT 961
           ELL+N    YR M EE  AN  + + +  +     E  V  Q+GR+
Sbjct: 362 ELLRNCAGFYRKMQEEIEANLGEADVERREDGEVLETKVALQLGRS 407


>02_02_0130 + 7062063-7063370
          Length = 435

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 824 ELLQNAFDLYRSMAEEKYANATKTEAKMTKLNH*TELTVLYQIGRT 961
           ELL+N    YR M EE  AN  + + +  +     E  V  Q+GR+
Sbjct: 362 ELLRNCAGFYRKMQEEIEANLGEADVERREDGEVFETKVALQLGRS 407


>01_05_0577 -
           23383987-23384097,23384120-23384188,23384217-23384372,
           23384381-23384539
          Length = 164

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 23/98 (23%), Positives = 46/98 (46%)
 Frame = +2

Query: 698 NKDSKDSNHQNNTQKSEPETNSPEKEKSNPDLQTHVFQKHDLELLQNAFDLYRSMAEEKY 877
           N++++ S HQ   Q+     + P +   +    T   Q  D+ L+QNA  +   + E   
Sbjct: 16  NEEAQCSKHQRQRQRMCNRGSQPHELLMSKSFSTFGLQVLDIPLMQNA-TMQTDLLELTK 74

Query: 878 ANATKTEAKMTKLNH*TELTVLYQIGRT*LXKMTNHQL 991
           +  T+ +A + +L+  T+L +L  I    + K+   +L
Sbjct: 75  SVGTRDDAGVRQLDA-TKLDLLQGIAMEEISKVEEGEL 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,731,324
Number of Sequences: 37544
Number of extensions: 376316
Number of successful extensions: 854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3724688640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)