Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_K19
         (1228 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    29   1.00 

>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -3

Query: 965 SVSLSDSGMLNLNYPEFTPSGVCMXELRCTVAPFLLCDI*GNSLSAF-LRY*MSFARFFF 789
           +  LS SGM+    PE     +         A FLLC I    +S F L    ++ RFF 
Sbjct: 2   NAKLSSSGMVLKELPEVALQKISSNYYWAVFAVFLLCAIVFPLVSIFSLPQKQTYHRFFS 61

Query: 788 FIS-PSCCVFKAVSC 747
            +S  SC  +  ++C
Sbjct: 62  ILSLVSCLAYFTMAC 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,053
Number of Sequences: 5004
Number of extensions: 60607
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)