Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_K19
         (1228 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81047-7|CAB02834.1|  297|Caenorhabditis elegans Hypothetical pr...    31   2.2  
Z50044-4|CAA90356.1|  164|Caenorhabditis elegans Hypothetical pr...    29   8.9  

>Z81047-7|CAB02834.1|  297|Caenorhabditis elegans Hypothetical
           protein C41G6.9 protein.
          Length = 297

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +3

Query: 297 RNPSWVFXCLSILVQTFTAFGXAWAGGLP--SXFFXTFAHXSXLPKMLTTKVRNPHVTAP 470
           RN      C+   V  F +F    A  LP  + +F  F+    +P ++TT +    V   
Sbjct: 56  RNSMLCLHCVGAFVDLFFSFFAIPALNLPIYAGYFLGFSRVLGVPTVVTTFLCYSFVGGQ 115

Query: 471 VTDXMXXKXAWNQPWQYQ 524
           +   +    AW QP  +Q
Sbjct: 116 LVSVLGATIAWEQPRSWQ 133


>Z50044-4|CAA90356.1|  164|Caenorhabditis elegans Hypothetical
           protein F22B5.4 protein.
          Length = 164

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 683 WEWEHANDIYWRIIILFFLIEG 748
           W+WE   D YW++  + F ++G
Sbjct: 117 WDWERLRDTYWKMPTVAFDLDG 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,973,943
Number of Sequences: 27780
Number of extensions: 346855
Number of successful extensions: 791
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3391198850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)