Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_K17
(1219 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 34 0.035
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 30 0.57
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.99
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.3
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma... 28 2.3
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 28 2.3
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 5.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 7.0
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 27 7.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 7.0
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 26 9.2
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 26 9.2
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 26 9.2
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 34.3 bits (75), Expect = 0.035
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 615 LPPPSNAASTPNTAIAPPL---IFPSTPVLAPVVSPPIINRTPEGKPVRKGYVP 767
+PPPS A++ P + APP+ + P APV SPP P P VP
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202
Score = 31.1 bits (67), Expect = 0.32
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +3
Query: 600 ASKGKLPPPSNAASTPNTAIAPPLIF---PSTPVLAPVVSPPIINRTP 734
+S PP + A TP + + PP PS P +P +PPI ++ P
Sbjct: 118 SSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP 165
Score = 29.5 bits (63), Expect = 0.99
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 615 LPPPSNAASTPNTAIAPPLIFPSTPVLAPVVSPPIINRTP 734
LPPP+ A+ + + P + + P + P V PP +++ P
Sbjct: 171 LPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 30.3 bits (65), Expect = 0.57
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 777 KIQKELQEMKDREQELKKMRKKQK 848
+++ EL+E ++RE+EL K R+K K
Sbjct: 383 RLEDELEEQRERERELAKKRRKNK 406
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.5 bits (63), Expect = 0.99
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 689 SIGTSSFPSYHQSYA*RETST-KGIRPRRREDTKGTTGNERQRTRAEENEE 838
S G+S P H+ Y E +G RED +G G+ER R R + +
Sbjct: 8 SSGSSRIPKRHRDYRDEEPRRERGSGGIGREDPRGHYGSERPRRRRRDESD 58
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 618 PPPSNAASTPNTAIAPPLIFPSTPVLAPVVSPPII 722
PPP S P+T PP + S V P PP I
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI 395
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 615 LPPPSNAASTPNTAI-APPLIFPSTPVLAPVVSPPIINRTPEGKP 746
LPP NA+ T + PP + PS P P +PP + P G P
Sbjct: 403 LPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSL---PMGAP 444
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 591 RFIASKGKLPPPSNAASTPNTAIAPPLIFP--STPVLAPV 704
R S G+ PPP +++ + APP P S P L P+
Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPL 406
>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 28.3 bits (60), Expect = 2.3
Identities = 11/30 (36%), Positives = 25/30 (83%), Gaps = 2/30 (6%)
Frame = +3
Query: 765 PVEEKIQ--KELQEMKDREQELKKMRKKQK 848
P E++++ ++L E+K+RE+ELK+ +++Q+
Sbjct: 34 PYEKRMEQKRKLDEIKEREKELKREKEEQR 63
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 28.3 bits (60), Expect = 2.3
Identities = 17/71 (23%), Positives = 29/71 (40%)
Frame = +3
Query: 537 NGYTRRFTPQTGTKGIMQRFIASKGKLPPPSNAASTPNTAIAPPLIFPSTPVLAPVVSPP 716
NGY ++ +P + I R + P A+ TP++ P +P L+ + S
Sbjct: 243 NGYRKKPSPLSPNSSIRNREGGNGSYFDGPLTASPTPSSPTGTPNSMSKSPSLSSLASTG 302
Query: 717 IINRTPEGKPV 749
R KP+
Sbjct: 303 ASYRPGPSKPL 313
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 615 LPPPSNAASTPNTAIAPPLIFPSTPVLAP 701
LP S S+PN+ ++ ++ STP+L P
Sbjct: 416 LPQRSRTISSPNSPLSATVLPSSTPILLP 444
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +3
Query: 771 EEKIQKELQEMKDREQE--LKKMRKKQKPFD 857
+ K+ +E++E R+QE LKK+R+K+K D
Sbjct: 569 QAKLLEEIEEENKRKQERELKKIREKEKKRD 599
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 609 GKLPPPSNAASTPNTAIAPPLI 674
G PPPS++A++ T IA PL+
Sbjct: 213 GHPPPPSDSANSSVTPIAAPLV 234
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 618 PPPSNAASTPNTAIAPPLIFPSTPVLAPVVSPP 716
PPP A P A AP + P P++ PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +3
Query: 735 EGKPVRKGYVPVEEKIQKELQEMKDREQELKKMRKKQKPFDLE 863
+GKP+ K + EK +++ Q+ K+RE + +KK++ +++
Sbjct: 28 DGKPLSKKALKKLEKEREKEQKRKEREAREAEEKKKREANEID 70
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 588 QRFIASKGKLPPPSNAASTPNTAIAPPLIFPSTPVLAPVVSPPI 719
Q+F+AS ++P P + + P+ A ++ P P + PPI
Sbjct: 168 QKFMASLAQIPGPLPSGNVPSPAEFQAMMASGFPPFMP-IPPPI 210
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 771 EEKIQKELQEMKDREQELKKMRKKQKPFDLE 863
EE KE E +E E KK+R+KQK + E
Sbjct: 94 EEYSLKERVERYHQELEAKKLRRKQKKVNKE 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,484,382
Number of Sequences: 5004
Number of extensions: 60661
Number of successful extensions: 249
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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