Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_K15
         (1226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...   360   e-100
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    29   1.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   4.0  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      27   7.0  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   7.0  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    26   9.3  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score =  360 bits (885), Expect = e-100
 Identities = 172/264 (65%), Positives = 203/264 (76%), Gaps = 3/264 (1%)
 Frame = +3

Query: 276  RTVSKVAAFLKNAAKGXKVLGAXSLDAMVSKLKRPRKIVLLVKAGFAVDXFVKKLIPLLS 455
            RT S+V  FL N AKG  ++GA SL+  VSKLK+PR  +LLVKAG  VD  ++ L PLL 
Sbjct: 37   RTTSRVDEFLANEAKGKSIVGAHSLEEFVSKLKKPRVCILLVKAGKPVDYLIEGLAPLLE 96

Query: 456  KGDIIIDGGNSQYLDTQKWCKELSGTGILYVGMGVSGGEDGARYGPSLMPGGHPAAWPHI 635
            KGDII+DGGNS Y DT + C+EL+  GIL+VG GVSGGE+GARYGPSLMPGG+PAAWP I
Sbjct: 97   KGDIIVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYGPSLMPGGNPAAWPRI 156

Query: 636  KEIFQAICAKA-NDEPCCDWVGEDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVIGIEQ 812
            K IFQ + AKA N+EPCCDWVGE GAGH+VKMVHNGIEYGDMQLICE Y +MK  +G+  
Sbjct: 157  KPIFQTLAAKAGNNEPCCDWVGEQGAGHYVKMVHNGIEYGDMQLICETYDIMKRGLGMSC 216

Query: 813  DEMAKVFDEWNKGELXSFLIEITRDILKYKDSDGKYLLPKIRDTAGQKGTGKWTGISALE 992
            DE+A VF++WN G+L SFLIEITRD+L+YK  DGK L+ KI D AGQKGTGKWT  +ALE
Sbjct: 217  DEIADVFEKWNTGKLDSFLIEITRDVLRYKADDGKPLVEKILDAAGQKGTGKWTAQNALE 276

Query: 993  YGVPVTLXGEXXFLTL--SLGSEK 1058
             G PV+L  E  F     SL SE+
Sbjct: 277  MGTPVSLITEAVFARCLSSLKSER 300



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +2

Query: 209 AVXGQNLILNLHAKGXVVC 265
           AV GQNLILN   KG  VC
Sbjct: 15  AVMGQNLILNGADKGFTVC 33



 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 1030 FSRCLSALKNXRLXXXKVXPGIXXXVXGXKK 1122
            F+RCLS+LK+ R+   K   G      G KK
Sbjct: 289  FARCLSSLKSERVRASKKLTGPNTKFTGDKK 319


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 18/68 (26%), Positives = 28/68 (41%)
 Frame = -1

Query: 749 IFNSIVHHFDKMACSIFTDPVTARFIISFSAYGLENFFYMRPCSRMPTRHQRWSISCTIF 570
           I + + H F  +    F D      ++ F A G E F  +R C R P +  ++  +  I 
Sbjct: 252 ILSRVQHPFITILWGTFQDAKNLFMVMDF-AEGGELFSLLRKCHRFPEKVAKFYAAEVIL 310

Query: 569 TSTYTHSN 546
              Y H N
Sbjct: 311 ALDYLHHN 318


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 21/81 (25%), Positives = 38/81 (46%)
 Frame = -2

Query: 910 SESLYFKISLVISIKNEXSSPLFHSSNTLAISSCSIPITSFIR**ASQISCISPYSIPLC 731
           S S  +  S ++      S+PL  +++T A S+ S P+TS      +  +  S  S PL 
Sbjct: 271 SSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTS-----VNSTTTTSASSTPLS 325

Query: 730 TILTKWPAPSSPTQSQHGSSL 668
           ++ +     ++ T S   SS+
Sbjct: 326 SVSSANSTTATSTSSTPLSSV 346


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +3

Query: 873  EITRDILKYKDSDGKYLLPKIRDTAGQKGTGKWTGISALEYGVPVTLXGEXXFLTLSL 1046
            E+  D    +D +GKY   +  D  GQ+ T +   + A E G  +++      ++ +L
Sbjct: 107  EVLNDDSDDEDDNGKYSKLRYEDIEGQEDTNQANDLDADEEGSEISVPSSPKRMSFNL 164


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 687 DWVGEDGAGHFVKMVHNGIEYGDMQLICE 773
           D+VG DG GH+      G +   +QL CE
Sbjct: 769 DFVGVDGVGHYPSKASEGRDRASIQL-CE 796


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 674 IISFSAYGLENF-FYMRPCSRMPTRHQRWSISCT 576
           I+S + Y L+N   YMRP  +   + + W + CT
Sbjct: 199 ILSNALYALDNVQTYMRPIFQGIDKRRGWKLDCT 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,064,436
Number of Sequences: 5004
Number of extensions: 83010
Number of successful extensions: 234
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)