Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_K10
(1256 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch... 53 1e-07
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.083
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 3.1
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 7.2
>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 257
Score = 52.8 bits (121), Expect = 1e-07
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Frame = +1
Query: 58 IPQGTPYILIPFIVIXETIRNIIRPGTLAVRLTANIIAGHLLITLL-----RRTGTN-IS 219
+P GTP LIP +V+ E + I R +L +RL ANIIAGHL +++L G N I+
Sbjct: 154 LPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSILGGLIFTFMGLNLIT 213
Query: 220 FYXXXXXXXXXXXXXXXESAVAIIQSYVITIL 315
F E +A IQ+YV IL
Sbjct: 214 FIIGFLPITVLVAISLLEFGIAFIQAYVFAIL 245
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.083
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Frame = -1
Query: 1250 PXXXPPXXXXXGGXXAPPPP---XGGGXXPXPXXXGXPPAGGXXXXXPPP 1110
P PP GG PPPP G G P P AGG P P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 32.7 bits (71), Expect = 0.11
Identities = 18/56 (32%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Frame = -3
Query: 1203 PPPPXXGXXGPPPXXXGXPPRGGXXXXGP-PPPPXGXKXXXPXXSPXXXPGXGXXG 1039
PPPP P P PP P PPPP G P P P G
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 31.5 bits (68), Expect = 0.25
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Frame = -1
Query: 1205 APPPPXGGGXXPXPXXXG---XPPAGGXXXXXPPPPPKGXKXXXPGXPRXXXP 1056
+PPPP P P PPA PPPPP G P P P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 30.7 bits (66), Expect = 0.44
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -1
Query: 1202 PPPPXGGGXXPXPXXXGXPPAGGXXXXXPPPPPKGXKXXXPGXPRXXXP 1056
PP P GG P P G AG PPPPP G R P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAG------PPPPPPPPPAVSAGGSRYYAP 795
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Frame = -3
Query: 1251 PXXGPPXXGXXXGXX-GPPPPXXGXXGPPPXXXGXP--PRGGXXXXGPPP 1111
P PP G PPPP GPPP P GG P P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/65 (27%), Positives = 19/65 (29%)
Frame = -1
Query: 1250 PXXXPPXXXXXGGXXAPPPPXGGGXXPXPXXXGXPPAGGXXXXXPPPPPKGXKXXXPGXP 1071
P PP G PPP P P G PP PP P + P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSA-GLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
Query: 1070 RXXXP 1056
R P
Sbjct: 1253 RSSVP 1257
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/53 (28%), Positives = 15/53 (28%)
Frame = -1
Query: 1238 PPXXXXXGGXXAPPPPXGGGXXPXPXXXGXPPAGGXXXXXPPPPPKGXKXXXP 1080
PP G P P P P G PP PP PP P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSS-GIPPVPKPAAGVPPVPPPSEAPPVP 1201
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/53 (28%), Positives = 15/53 (28%)
Frame = -1
Query: 1238 PPXXXXXGGXXAPPPPXGGGXXPXPXXXGXPPAGGXXXXXPPPPPKGXKXXXP 1080
PP G P P G P P PP PP PP P
Sbjct: 1169 PPVPAPSSGIPPVPKP-AAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 3.1
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = -2
Query: 1204 PPPPXXGXGXXPXPGXGXPPPRGGXXXXXPPPPXRGXXAXXXXXPGXRA 1058
PPPP P P P P G PPPP A PG R+
Sbjct: 1707 PPPPPMSV---PPPPSAPPMPAG--PPSAPPPPLPASSAPSVPNPGDRS 1750
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/49 (38%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Frame = +2
Query: 1070 GXXXGXXXXXPXGGGGGPXXXXPPR---GGXPXXXGGGPXXPXXGGGGP 1207
G G P G GGGP GG P GGGP G GGP
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP----GGHGGP 271
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +2
Query: 1058 GXXXGXXXGXXXXXPXGGGGGPXXXXPPRGGXPXXXGGGPXXPXXGGGGP 1207
G G G GG GG GG GG P GGGP
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +2
Query: 1082 GXXXXXPXGGGGGPXXXXPPRGGXPXXXGGGPXXPXXGGGGP 1207
G P G GGP GG GG P GGGP
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/62 (27%), Positives = 17/62 (27%)
Frame = -1
Query: 1238 PPXXXXXGGXXAPPPPXGGGXXPXPXXXGXPPAGGXXXXXPPPPPKGXKXXXPGXPRXXX 1059
PP P PP G P P P G PPP P P
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG----RQPPPLSSSRAVSNPPAPPPAI 395
Query: 1058 PG 1053
PG
Sbjct: 396 PG 397
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = -1
Query: 1250 PXXXPPXXXXXGGXXAPPPPXGGGXXPXPXXXGXPPAGGXXXXXPPPPP 1104
P PP G APP P P P G P A P PPP
Sbjct: 432 PPSAPPSLPM-GAPAAPPLPPSAPIAP-PLPAGMPAAPPLPPAAPAPPP 478
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 995 PGGXPPRXXPPRGXPPXXPXPGXXXG 1072
PG PP PP PP P P G
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPG 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,466
Number of Sequences: 5004
Number of extensions: 38273
Number of successful extensions: 218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 681602054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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