Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_K09
         (1197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    48   3e-06
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    42   2e-04
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    35   0.019
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    35   0.026
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    32   0.14 
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    30   0.73 
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    29   1.7  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    28   2.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   5.2  
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    27   5.2  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    26   9.0  

>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 26/64 (40%), Positives = 39/64 (60%)
 Frame = +3

Query: 576 RLSYIDLSGNVIKKTGNGLFAQFGRLIYLNISRNQLEDIPRSTFADLENLEVLDLSHNRL 755
           R++ + L  N IK  G  +  +F RL YLNI  N L + P S    LE+LE+LD+S N++
Sbjct: 53  RIARLALGHNFIKSIGPEIL-KFTRLRYLNIRSNVLREFPES-LCRLESLEILDISRNKI 110

Query: 756 RFIP 767
           + +P
Sbjct: 111 KQLP 114



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 868  LKTLFLNDNSLXKITSNALXNLKEXETLDLSNNXLXYXPKSFSTI 1002
            L+ L +  N L +   + L  L+  E LD+S N +   P+SF  +
Sbjct: 77   LRYLNIRSNVLREFPES-LCRLESLEILDISRNKIKQLPESFGAL 120


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 23/67 (34%), Positives = 41/67 (61%)
 Frame = +3

Query: 597 SGNVIKKTGNGLFAQFGRLIYLNISRNQLEDIPRSTFADLENLEVLDLSHNRLRFIPFQV 776
           S ++++K      + + +L+YL  S  +L+ IP++ F  L++L  LDLS N L  IP+ +
Sbjct: 316 SSSLMEKDAILSSSSWSQLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYAL 375

Query: 777 FEPMPKL 797
            E +P+L
Sbjct: 376 GE-LPQL 381



 Score = 31.5 bits (68), Expect = 0.24
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 790 PNFSTWNLSYNKLXTFLDYYFNPNKHLKTLFLNDNSLXKITSNALXNLKEXETLDLSNNX 969
           P   + NL+ NK+     +Y     HL+ L L+ N L  +  + L N+   E LD+ +N 
Sbjct: 379 PQLCSLNLASNKITGCRTFYHISLSHLQILVLSRNHLTSL--SGLENVPSLEKLDIRDNS 436

Query: 970 L 972
           +
Sbjct: 437 I 437



 Score = 31.1 bits (67), Expect = 0.32
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = +3

Query: 528 NSNINYLEIDLF---KTFPRLSYIDLSGNVIKKTGNGLFAQFGRLIYLNISRNQLEDIPR 698
           NS+ + +E D      ++ +L Y+  S   +K     +F     L+ L++S N+L +IP 
Sbjct: 314 NSSSSLMEKDAILSSSSWSQLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPY 373

Query: 699 STFADLENLEVLDLSHNRL 755
           +   +L  L  L+L+ N++
Sbjct: 374 A-LGELPQLCSLNLASNKI 391


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 35.1 bits (77), Expect = 0.019
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 657 YLNISRNQLEDIPRSTFADLENLEVLDLSHN 749
           YL ++  QL+++P+     + NL VLDLSHN
Sbjct: 871 YLELANVQLKEVPKYIATSMPNLRVLDLSHN 901



 Score = 27.9 bits (59), Expect = 3.0
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 790  PNFSTWNLSYNKLXTFLDYYFNPNKHLKTLFLNDNSLXKITS--NALXNLKEXETLDLSN 963
            PN    +LS+N +         P + +  L+L  N + K+ +  + L NLK+   LDL  
Sbjct: 891  PNLRVLDLSHNYISDIES--LKPLQMIHRLYLVGNRIKKMRNLCDILANLKQLNVLDLRM 948

Query: 964  NXLXY 978
            N L +
Sbjct: 949  NPLNF 953



 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +3

Query: 660 LNISRNQLEDIPRSTFADLENLEVLDLSHNRL 755
           LN   N+L  +  ++F++L NL+ LD+S+N+L
Sbjct: 651 LNAVENRLSSL--TSFSNLLNLQYLDISYNQL 680


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 34.7 bits (76), Expect = 0.026
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
 Frame = +3

Query: 576 RLSYIDLSGNVIKKTGNGLFAQFGR--LIYLNISRNQLEDIPRSTFADLENLEVLDLSHN 749
           +L  +++S N I +    +F+   R  L  LNI+ N+L  +P ST   L NL  LDLS+N
Sbjct: 477 QLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLFFLPHST-RYLVNLTYLDLSYN 535

Query: 750 RLRFIPFQVFEPMPKLQYLEF 812
                P  + E + +L+ L F
Sbjct: 536 NFVTFPLIITE-LSQLETLNF 555



 Score = 31.1 bits (67), Expect = 0.32
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = +3

Query: 588 IDLSGNVIKKTGNGLFAQFGRLIYLNISRNQLEDIPRSTFADLENLEVLDLSHNRLRFIP 767
           +D+  +V++K     F++      L+ISR+ LE IP   +     L  L++SHN    +P
Sbjct: 391 MDIGADVLRK-----FSEKKITANLDISRSNLEVIPVKIYPYAHELISLNVSHNLSLDLP 445

Query: 768 FQVFEPMPKLQYLE 809
               E   KL+ L+
Sbjct: 446 LDFMERCVKLKRLD 459



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
 Frame = +3

Query: 534 NINYLEIDL--FKTFP-------RLSYIDLSGNVIKKTGNGLFAQFGRLIYLNISRNQLE 686
           N+ YL++    F TFP       +L  ++ S N++ +  + +     +L +L +  N L 
Sbjct: 526 NLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQISSKI-GSLVKLKHLYLQFNDLS 584

Query: 687 DIPRSTFADLENLEVLDLSHNRL 755
           +        L+NLE +DLS+N +
Sbjct: 585 NRLPQEIGLLKNLETIDLSYNAI 607



 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 642 FGRLIYLNISRNQLEDIPRSTFADLENLEVLDLSHNRLRFIPFQVFEPMPKLQYL 806
           +  L+Y +IS  +L  +  S    L N+E + +++N    I       M  L+YL
Sbjct: 658 YSNLVYFDISHAKLIGLKDSVIETLVNVETVKVNYNHFTSIS-DAISAMQNLKYL 711



 Score = 27.5 bits (58), Expect = 3.9
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 606 VIKKTGNGLFAQ---FGRLIYLNISRNQLEDIPRSTFADLENLEVLDLSHNRL 755
           V  + GN  F     F  L  LN+S N L +IP   F +  +L+ L +S N L
Sbjct: 814 VDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSGNEL 866



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = +1

Query: 802 TWNLSYNKLXTFLDYYFNPNKHLKTLFLNDNSLXKITSNALXNLKEXETLDLSNNXL 972
           T N S+N L        +  K LK L+L  N L       +  LK  ET+DLS N +
Sbjct: 552 TLNFSHNLLSQISSKIGSLVK-LKHLYLQFNDLSNRLPQEIGLLKNLETIDLSYNAI 607



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 18/78 (23%), Positives = 36/78 (46%)
 Frame = +3

Query: 516 IIWTNSNINYLEIDLFKTFPRLSYIDLSGNVIKKTGNGLFAQFGRLIYLNISRNQLEDIP 695
           +++T  +I    +  F      + +D+S + ++     ++     LI LN+S N   D+P
Sbjct: 386 LVFTTMDIGADVLRKFSEKKITANLDISRSNLEVIPVKIYPYAHELISLNVSHNLSLDLP 445

Query: 696 RSTFADLENLEVLDLSHN 749
                    L+ LD+S+N
Sbjct: 446 LDFMERCVKLKRLDISNN 463


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 24/84 (28%), Positives = 40/84 (47%)
 Frame = +3

Query: 519 IWTNSNINYLEIDLFKTFPRLSYIDLSGNVIKKTGNGLFAQFGRLIYLNISRNQLEDIPR 698
           +W   N    + + F+   +LS + +  N I +  N L      L  L +S N L     
Sbjct: 175 LWVGKN-KITKFENFEKLQKLSLLSIQSNRITQFEN-LACLSHCLRELYVSHNGLTSF-- 230

Query: 699 STFADLENLEVLDLSHNRLRFIPF 770
           S    LENLE+LD+S+N ++ + +
Sbjct: 231 SGIEVLENLEILDVSNNMIKHLSY 254


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 561 FKTFPRLSYIDLSGNVIKKTGNGLFAQ-FGRLIYLNISRNQLEDIPRSTFADLENLEVLD 737
           FK    L  + L+ N+   + +G     F  +  LN+S   L D+       L  L  LD
Sbjct: 237 FKNLQFLQTLSLANNLNLYSADGYAVDVFQGINNLNLSSTSLADVAELPVHTLHKLTFLD 296

Query: 738 LSHNRLRFI 764
           +S N +R I
Sbjct: 297 ISENNIRDI 305


>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
 Frame = +3

Query: 417 TCDDEHLTCSNTSVQDNKLTKTTLAKYGNLLDTIIWTNS----NINYLEIDLFKTFPRLS 584
           T D EHL          K  K      G L+DT     +     +    +D+++   RL 
Sbjct: 209 TPDTEHLVDEKLLASMKKGVKIINTSRGGLVDTKALVKAIESGQVGGCAMDVYEGERRLF 268

Query: 585 YIDLSGNVIKKTGNGLFAQFGRLI 656
           Y DLS  VIK T     A F  ++
Sbjct: 269 YRDLSNEVIKDTTFQQLANFPNVL 292


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/56 (19%), Positives = 26/56 (46%)
 Frame = +3

Query: 519 IWTNSNINYLEIDLFKTFPRLSYIDLSGNVIKKTGNGLFAQFGRLIYLNISRNQLE 686
           +W    + +  + +F  F    ++   GN+I   G+ LF  +G ++ ++ +    E
Sbjct: 129 LWPFKIVLWFVLGIFSFFIPTKFLSFWGNIISVMGSALFIVYGLMLLVDFAHTWAE 184


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 582  SYIDLSGNVIKKTGNGLFAQFGRLIYLNISRN-QLEDIPRSTFADLENLEVLDLSHNR 752
            SY+DL+  +       + +  G+L+   +  N  L++  R   ++L NL+ L   HNR
Sbjct: 2513 SYLDLAMKLKHDLIRTVVSHTGKLLVEKVKGNYHLKEHEREVSSELLNLQQLSAEHNR 2570


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 669 SRNQLEDIPRSTFADLENLEVLDLSHNRLRFIPF 770
           SRN L   P +T  +LE  ++ DLSH R   +PF
Sbjct: 396 SRNSL---PNNTTKELEMKKMDDLSHERYENLPF 426


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 666 ISRNQLEDIPRSTFADLENLEVLD 737
           +S+N  ED+ RS+ ADLE  +VL+
Sbjct: 656 VSKNGFEDVERSSVADLEE-DVLE 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,831,544
Number of Sequences: 5004
Number of extensions: 74422
Number of successful extensions: 210
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)