Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_K09
(1197 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 45 1e-06
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 25 1.3
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 23 4.0
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 23 5.3
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 45.2 bits (102), Expect = 1e-06
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Frame = +3
Query: 504 LLDTIIWTNSNINYLEIDLFKTFPRLSYIDLSGNVIKKTGNGLFAQFGRLIYLNISRNQL 683
+L T + ++++ L LF + L I L+ N ++ G+F + +L+ LN++ N+L
Sbjct: 262 VLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRL 321
Query: 684 --EDIPRSTFADLENLEVLDLSHNRLRFIPFQVFEPMPKLQYLE 809
+ + +TF L L VL+LS+N L I ++F+ + LQ L+
Sbjct: 322 GSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILD 365
Score = 41.5 bits (93), Expect = 1e-05
Identities = 30/99 (30%), Positives = 48/99 (48%)
Frame = +3
Query: 576 RLSYIDLSGNVIKKTGNGLFAQFGRLIYLNISRNQLEDIPRSTFADLENLEVLDLSHNRL 755
RL ++LS N++ +F L L++ N ++ I + F L NL L+LS N+L
Sbjct: 336 RLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKL 395
Query: 756 RFIPFQVFEPMPKLQYLEFIV**IXNIFRLLFQSKQTLK 872
R + Q+F + L L I +I L F++ LK
Sbjct: 396 RTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLK 434
Score = 41.1 bits (92), Expect = 2e-05
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +3
Query: 594 LSGNVIKKTGNGLFAQFGRLIYLNISRNQLEDIPRSTFADLENLEVLDLSHNRLRFIPFQ 773
L GNV+++ N +F + L ++ + +E I TF L NL++L L NR+R +
Sbjct: 801 LDGNVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGF 860
Query: 774 VFEPMPKLQYL 806
FE + L+ L
Sbjct: 861 EFERLSHLREL 871
Score = 37.9 bits (84), Expect = 2e-04
Identities = 32/112 (28%), Positives = 49/112 (43%)
Frame = +3
Query: 507 LDTIIWTNSNINYLEIDLFKTFPRLSYIDLSGNVIKKTGNGLFAQFGRLIYLNISRNQLE 686
L T+ +++ + + LF L+ + LSGN I F L L++S N+L
Sbjct: 385 LHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELT 444
Query: 687 DIPRSTFADLENLEVLDLSHNRLRFIPFQVFEPMPKLQYLEFIV**IXNIFR 842
+P DL L+ LDL NR+ F + +L L I I N+ R
Sbjct: 445 SVP-DALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSR 495
Score = 37.5 bits (83), Expect = 2e-04
Identities = 23/55 (41%), Positives = 29/55 (52%)
Frame = +1
Query: 808 NLSYNKLXTFLDYYFNPNKHLKTLFLNDNSLXKITSNALXNLKEXETLDLSNNXL 972
NLSYN L F L+ L L +NS+ +I SNA L TL+LS+N L
Sbjct: 341 NLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKL 395
Score = 35.1 bits (77), Expect = 0.001
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +3
Query: 516 IIWTN-SNINYLEIDLFKTFPRLSYIDLSGNVIKKTGNGLFAQFGRLIYLNISRNQLEDI 692
+++ N S I ++ F L + L N I++ F + L L + N + I
Sbjct: 822 VLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLIGFI 881
Query: 693 PRSTFADLENLEVLDLSHNRLRFIP 767
TF L +LE+L LS NRL P
Sbjct: 882 GNLTFLPLRSLEILRLSGNRLVTFP 906
Score = 34.7 bits (76), Expect = 0.002
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = +3
Query: 504 LLDTIIWTNSNINYLEIDLFKTFPRLSYIDLSGNVIKKTGNGLFAQFGRLIYLNISRNQL 683
LL T+ + I+ F+ +L+ + L GN I G+ L LN++RN++
Sbjct: 455 LLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKV 514
Query: 684 EDIPRSTFADLENLEVLDLSHNRL 755
+ + R F LE + L N L
Sbjct: 515 QHVERYAFERNMRLEAIRLDGNFL 538
Score = 32.7 bits (71), Expect = 0.007
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 531 SNINYLEIDLFKTFPRLSYIDLSGNVIKKTGNGLFAQFGRLIYLNISRNQLE 686
+ + ++E F+ RL I L GN + NG+F L+ LN+S N +E
Sbjct: 512 NKVQHVERYAFERNMRLEAIRLDGNFLSDI-NGVFTSIASLLLLNLSENHIE 562
Score = 31.9 bits (69), Expect = 0.011
Identities = 24/91 (26%), Positives = 38/91 (41%)
Frame = +3
Query: 537 INYLEIDLFKTFPRLSYIDLSGNVIKKTGNGLFAQFGRLIYLNISRNQLEDIPRSTFADL 716
+ +++ +FK L +DL N I + + F L L +S N+L + F L
Sbjct: 347 LTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGL 406
Query: 717 ENLEVLDLSHNRLRFIPFQVFEPMPKLQYLE 809
L L LS N + I F L+ L+
Sbjct: 407 FVLNRLTLSGNAIASIDPLAFRNCSDLKELD 437
Score = 30.3 bits (65), Expect = 0.035
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 660 LNISRNQLEDIPRSTFADLENLEVLDLSHNRLRFI 764
L I + ++ +P ++ L+NL+ L+L+ NRLR I
Sbjct: 152 LEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDI 186
Score = 30.3 bits (65), Expect = 0.035
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 802 TWNLSYNKLXTFLDYYFNPNKHLKTLFLNDNSLXKITSNALXNLKEXETLDLSNNXL 972
T+N SYN L + + F + L+ + L N L + L++ L+L+ N L
Sbjct: 265 TFNASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRL 321
Score = 29.9 bits (64), Expect = 0.046
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 790 PNFSTWNLSYNKLXTFLDYYFNPNKHLKTLFLNDNSLXKITSNALXNLKEXETLDLSNNX 969
PN NL+ NK+ Y F N L+ + L+ N L I + ++ L+LS N
Sbjct: 502 PNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDI-NGVFTSIASLLLLNLSENH 560
Query: 970 LXYXPKSF 993
+ + +F
Sbjct: 561 IEWFDYAF 568
Score = 24.2 bits (50), Expect = 2.3
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 850 FNPNKHLKTLFLNDNSLXKITSNALXNLKEXETLDLSNNXLXY 978
FN +L+ L L DN + ++ L L L NN + +
Sbjct: 838 FNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLIGF 880
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 25.0 bits (52), Expect = 1.3
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 417 TCDDEHLTCSNTSVQDNKLTKTTLAKYGNLLDTIIWTNSNINYLEIDLFKTFPRLSYIDL 596
+C EH +N S + K K + LLD I S+I E+D+ K L+
Sbjct: 424 SCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDIT--ELDVSKRCKDLA--SF 479
Query: 597 SGNVIKKT 620
GN++++T
Sbjct: 480 MGNLLQET 487
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 23.4 bits (48), Expect = 4.0
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 417 TCDDEHLTCSNTSVQDNKLTKTTLAKYGNLLDTIIWTNSNINYLEI 554
+C EH +N S + K K + LLD I S+I L++
Sbjct: 130 SCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDV 175
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 23.0 bits (47), Expect = 5.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 654 IYLNISRNQLEDIPRSTFADLENLEVLDLSHNRLRFIPFQV 776
I +S +DIP T + EN + LDL + +P Q+
Sbjct: 304 IKTELSTGMNDDIPPETEEEEENDKKLDLDSIDMMQLPIQL 344
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,216
Number of Sequences: 438
Number of extensions: 5281
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40849839
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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