Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_K07
         (1246 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336...    30   4.4  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   7.6  

>06_01_0474 -
           3362734-3362827,3363179-3363366,3363458-3363700,
           3363820-3364098,3364189-3364386,3364475-3365110,
           3365209-3365463,3365579-3365685,3365770-3369566,
           3369677-3370166,3370918-3371308,3371481-3371573,
           3371687-3371810,3372544-3372791
          Length = 2380

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 520 PPXGGXXPXPPPXXPGAPGXWGG 452
           PP  G  P PPP   G PG  GG
Sbjct: 7   PPGTGAPPPPPPAAVGPPGGVGG 29


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 17/52 (32%), Positives = 19/52 (36%)
 Frame = -1

Query: 520 PPXGGXXPXPPPXXPGAPGXWGGXXEGXPXXNPXSPGXGRFX*AGKTXPPXP 365
           PP     P PPP  P +P   G      P   P +P   R    G   PP P
Sbjct: 324 PPAHPAAPAPPPPAP-SPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPP 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,467,764
Number of Sequences: 37544
Number of extensions: 267634
Number of successful extensions: 652
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3841085160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)