Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_K04
(1180 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.31
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.9
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 28 2.9
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 27 5.1
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |... 26 8.8
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.1 bits (67), Expect = 0.31
Identities = 20/57 (35%), Positives = 25/57 (43%)
Frame = -2
Query: 927 PLGPRAPRGXLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVASSTLYA*LPSPP 757
P P AP+ APV P PS+P P P+ P + P VA +P PP
Sbjct: 539 PEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEV--PSVPQPP 593
Score = 31.1 bits (67), Expect = 0.31
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = -2
Query: 927 PLGPRAPRGXLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVASSTLYA*LPSPPSS 751
P P P+ +APV P PS+P P P+ P P AV +P PP++
Sbjct: 584 PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEV--PSVPQRPAVPVVPEAPSVPQPPAA 640
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = -2
Query: 927 PLGPRAPRGXLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVASSTLYA*LPSPPS 754
P P P+ APV P PS+P P P+ P + P V +P PP+
Sbjct: 629 PEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEV--PSVPQPPA 684
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 927 PLGPRAPRGXLAPVSPLGPSMPGGPCGPLGPRSHRQYPP 811
P P P+ APV P PS+P P P+ P + + P
Sbjct: 659 PEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAGQLNEP 697
Score = 27.9 bits (59), Expect = 2.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -2
Query: 927 PLGPRA---PRGXLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVA 793
P+ P A P+ +APV+P PS+P P P+ P + P VA
Sbjct: 566 PVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVA 613
Score = 26.2 bits (55), Expect = 8.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 918 PRAPRGXLAPVSPLGPSMPGGPCGPLGP 835
P P+ APV P PS+ P P+ P
Sbjct: 512 PSVPQPPAAPVVPEAPSVHQPPAAPVAP 539
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 2.2
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -2
Query: 927 PLGPRAPRGXLAPVSPLGPSMPGGPCGPLGPRSHRQYPPSNGAVASSTLYA*LPSPP 757
P PR+ P+ P G S P P P + RQ PP ++SS + P+PP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP----LSSSRAVSNPPAPP 392
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.9
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Frame = -2
Query: 918 PRAPRGXLAPVSPLGPSM----PGGPCGPLGPRSHRQYPPSNGAV-ASSTLYA*LPSPPS 754
P AP +APV P P M P P P Q PP+ V S + + PPS
Sbjct: 1448 PPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPS 1507
Query: 753 S 751
S
Sbjct: 1508 S 1508
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = +1
Query: 52 PPLGPAGLCVTSPLSCCPGTLLPRRQRIQSGGTAPXXXXXXXXXQHSAMPDGPGVAI 222
PPL PA C ++P P T + + + H+A+P P +A+
Sbjct: 216 PPLCPATYCPSNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINNHTAVPLSPTLAV 272
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -1
Query: 904 RSSRSSITFGSLHARRSLWSPRSSLASTIPAF 809
+SS S + S+ +R L+SPR SL ++PAF
Sbjct: 385 QSSLLSFEWISIISRALLFSPRPSLLISVPAF 416
>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 8.8
Identities = 23/81 (28%), Positives = 29/81 (35%)
Frame = +2
Query: 557 SDGKKCVPRIPLAIAEPLPLVRASSRCYAPCDTVTWLTRKVRQLNDQXXXXXXXXXXXXE 736
S +K V +PL+ + PLV S Y P +T L +K Q N E
Sbjct: 18 SGDEKSVKILPLSESSLPPLVTTISGFYPPENTRFQLLKKSNQSNRDASLIGRTERVQFE 77
Query: 737 HPMLKDDGGEGNYAYRVLDAT 799
E NY V D T
Sbjct: 78 AKNQSTATVEANYCLAVADKT 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,291,561
Number of Sequences: 5004
Number of extensions: 88050
Number of successful extensions: 250
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 633513876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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