Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_K02
         (1168 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    29   1.6  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    27   3.8  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   5.0  

>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 973

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +2

Query: 194  EXSTYDEVDVDXLLSKLTQEELSXLAKEVDPDXNXLPPSQRNNYXCXKDPTGPLNRXXLI 373
            E S  + + V+   +++  E L  ++    P    +PP Q  N      P+GP+    L+
Sbjct: 907  EASQTESILVEKEATRVANEALRAVSSFRRPPRQLIPPQQSTNVPGTSKPSGPITSSTLL 966

Query: 374  XHI 382
              +
Sbjct: 967  ARL 969


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 21/71 (29%), Positives = 26/71 (36%)
 Frame = +2

Query: 245 TQEELSXLAKEVDPDXNXLPPSQRNNYXCXKDPTGPLNRXXLIXHIXXXALETPEPAGGQ 424
           TQE L  L     PD + L  S  NN     DP  P      I      A+E P P    
Sbjct: 101 TQELLESLGISAIPDLSNLGASNNNNSGLTFDPNDPSAAAFYIAQ-QVAAIEHPPPRKMT 159

Query: 425 AFRPRRRQGQE 457
           +    R + +E
Sbjct: 160 SSEKTRSENRE 170


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 435 PGVVRGKKWXPPPXPXKVRDAXEQITIDLGD 527
           PG+ RG+   P     K R   EQITI++G+
Sbjct: 337 PGLFRGRGSHPKTGSLKRRVYPEQITINIGE 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,684
Number of Sequences: 5004
Number of extensions: 34977
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)