Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_K02
         (1168 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97193-9|AAL13319.1|  401|Caenorhabditis elegans Tropomodulin pr...    68   1e-11
U97193-8|AAB52440.3|  392|Caenorhabditis elegans Tropomodulin pr...    68   1e-11

>U97193-9|AAL13319.1|  401|Caenorhabditis elegans Tropomodulin
           protein 1, isoform b protein.
          Length = 401

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 9/148 (6%)
 Frame = +3

Query: 417 EVKPFVPGVVRGKKWXPPPXPXKVRDAXEQ----ITIDLGDXYXQ---ALGTASQEEIID 575
           +V P+ PG  RGK +              +    I IDL D   +   AL TA +++++D
Sbjct: 119 DVCPYTPGQKRGKVYDSDSGRNSEEPENGKMEMPIEIDLDDDEEELECALVTAPEKDLVD 178

Query: 576 LADILGFHSMMNQDQYH--ASXLNXGXPVGXXWDGIXXATXPKVFPXDPXXDTDPDXTIA 749
           LA ILG H+++NQ QY+            G  ++GI  +  P++ P +P  DTD +  I 
Sbjct: 179 LAGILGMHNVLNQPQYYNALKGKTQDESTGTTFNGIMQSYVPRIVPDEPDNDTDVESCIN 238

Query: 750 XVXQNDQKLTDLNWNIMXNXXDEKFDKL 833
            + ++D  L ++N N M     E+   L
Sbjct: 239 RLREDDTDLKEVNINNMKRVSKERIRSL 266



 Score = 55.2 bits (127), Expect = 8e-08
 Identities = 31/97 (31%), Positives = 49/97 (50%)
 Frame = +2

Query: 173 PDKLYGREXSTYDEVDVDXLLSKLTQEELSXLAKEVDPDXNXLPPSQRNNYXCXKDPTGP 352
           P K+Y +      + D++ LLS L+ +EL  L  + DPD + LPPSQR      K+PTGP
Sbjct: 41  PSKVYNKGLK---DNDIEGLLSSLSIDELEDLNNDFDPDNSMLPPSQRCRDQTDKEPTGP 97

Query: 353 LNRXXLIXHIXXXALETPEPAGGQAFRPRRRQGQEVD 463
             R  L+  +   A    +      + P +++G+  D
Sbjct: 98  YKRDNLLKFLEDKAKTEKDWEDVCPYTPGQKRGKVYD 134


>U97193-8|AAB52440.3|  392|Caenorhabditis elegans Tropomodulin
           protein 1, isoform a protein.
          Length = 392

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 9/148 (6%)
 Frame = +3

Query: 417 EVKPFVPGVVRGKKWXPPPXPXKVRDAXEQ----ITIDLGDXYXQ---ALGTASQEEIID 575
           +V P+ PG  RGK +              +    I IDL D   +   AL TA +++++D
Sbjct: 110 DVCPYTPGQKRGKVYDSDSGRNSEEPENGKMEMPIEIDLDDDEEELECALVTAPEKDLVD 169

Query: 576 LADILGFHSMMNQDQYH--ASXLNXGXPVGXXWDGIXXATXPKVFPXDPXXDTDPDXTIA 749
           LA ILG H+++NQ QY+            G  ++GI  +  P++ P +P  DTD +  I 
Sbjct: 170 LAGILGMHNVLNQPQYYNALKGKTQDESTGTTFNGIMQSYVPRIVPDEPDNDTDVESCIN 229

Query: 750 XVXQNDQKLTDLNWNIMXNXXDEKFDKL 833
            + ++D  L ++N N M     E+   L
Sbjct: 230 RLREDDTDLKEVNINNMKRVSKERIRSL 257



 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 31/97 (31%), Positives = 50/97 (51%)
 Frame = +2

Query: 173 PDKLYGREXSTYDEVDVDXLLSKLTQEELSXLAKEVDPDXNXLPPSQRNNYXCXKDPTGP 352
           P K+Y +     ++ D++ LLS L+ +EL  L  + DPD + LPPSQR      K+PTGP
Sbjct: 29  PSKVYNKGLKDLEDNDIEGLLSSLSIDELEDLNNDFDPDNSMLPPSQRCRDQTDKEPTGP 88

Query: 353 LNRXXLIXHIXXXALETPEPAGGQAFRPRRRQGQEVD 463
             R  L+  +   A    +      + P +++G+  D
Sbjct: 89  YKRDNLLKFLEDKAKTEKDWEDVCPYTPGQKRGKVYD 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,387,704
Number of Sequences: 27780
Number of extensions: 225330
Number of successful extensions: 454
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3182509690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)