Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J23
         (1122 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    28   2.7  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    27   3.6  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    27   6.3  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   8.3  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 591 EYKNYKLMNDISHQDVR 641
           E+KN++L  DISH +VR
Sbjct: 648 EFKNFRLSTDISHSNVR 664


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 443 SMFEPSTSSYIHDCIKSPAKRCQSLENLNLAVEPPINAETSPEMDCVSTRI 595
           S++E     +++   K  A    + EN N   E  ++A+T+P+MD  S+ I
Sbjct: 225 SLYEQDPEGFVNPYSKRGAAALANSEN-NKGSEAGVSAKTNPDMDSDSSAI 274


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 792 YTKLGTTIFHYLFPNTNTLINILFY 718
           Y  LG T+F    P TNT +NI  +
Sbjct: 321 YAILGCTLFLLCIPRTNTSLNIYLF 345


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 897 FKYKLILLYQNINEFXNFSIGXIYYSDY 980
           + Y +IL +QN      FS+   +YSD+
Sbjct: 353 YDYNIILFFQNSAREYMFSLTDFFYSDF 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,213,553
Number of Sequences: 5004
Number of extensions: 89371
Number of successful extensions: 230
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 595662418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)