Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J23
         (1122 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266...    29   8.9  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     29   8.9  

>01_06_0645 +
           30826267-30826307,30826403-30826454,30826580-30826659,
           30826804-30826882,30826962-30827045,30827131-30827276,
           30827362-30827628,30827825-30827907,30828162-30828271,
           30828544-30829159,30829471-30829620,30829700-30829800
          Length = 602

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 242 RETKSNYSVMRLNTRYVSNVTVGYCMKRATNKNRLCPYVVPIRHRTKSENSD 397
           +ET SNYS  R  ++ ++N    Y  K++    R      P   + ++E+ D
Sbjct: 216 KETVSNYSSNREGSKEITNSATSYKSKKSERHGRSTTSEAPSSKKGENEDDD 267


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
 Frame = +2

Query: 209  SAITEARREYLRETKSNYSVMRLNTRYVSNVTVGYCMKRATNKNRLCPYVVPIRHRTKSE 388
            S   E R     + +    V  LN    S + VG+ +K  TNK +L      I+     +
Sbjct: 3441 SETLETRENITTKDEEEMEVGHLNES--SGIEVGFLVKEDTNKIKLLEADSNIKSNADKK 3498

Query: 389  NSDALANDPSDNGCEFKSSMFEP-STSSYIH-DCIKSPAKRCQSLENLNLAVEPPINAET 562
            +   L  + +D   EF ++  +P S S ++H D ++  A    ++E    ++E   N E 
Sbjct: 3499 DIQILQYEHTDES-EFGTN--DPKSDSLFVHVDMVQRDASLGTNIEECGASLEAADN-EK 3554

Query: 563  SPEMDC 580
                DC
Sbjct: 3555 KDMADC 3560


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,346,964
Number of Sequences: 37544
Number of extensions: 510026
Number of successful extensions: 1122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3386386840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)