Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J23
         (1122 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   6.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   8.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 871 DFSFPINCIKNKSG*NTYTTHAKSNQLHQA-RNNNIPLLIP 752
           D +  I  ++ K     YT  A++ Q H A R+ ++ +++P
Sbjct: 570 DGTLVITSVQKKGDAGVYTCSARNKQGHSARRSGDVAVIVP 610


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 871 DFSFPINCIKNKSG*NTYTTHAKSNQLHQA-RNNNIPLLIP 752
           D +  I  ++ K     YT  A++ Q H A R+ ++ +++P
Sbjct: 570 DGTLVITSVQKKGDAGVYTCSARNKQGHSARRSGDVAVIVP 610


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 234 SRLASVIALSMPKSCKALSKFSRFM 160
           S+  +VI   +PKS K  S F+RF+
Sbjct: 165 SQNIAVIEYRIPKSGKGFSLFARFL 189


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -1

Query: 630 GG*CHSSTCSFCIRVETQSISGDVSAFIGGSTARLRFSRDWHLFAGLFMQSW 475
           G    S+ C+  + ++  +I+G V++  G    R+R S   H  +    QSW
Sbjct: 38  GNDTRSADCTLRV-LDPGAITGLVASLDGALKLRIRCSDVHHFESSFNAQSW 88


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 115 LDLVNNWEICVKNSENKHH 59
           ++L NNW IC ++   K +
Sbjct: 22  VELPNNWRICDRSLPQKEY 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 276,919
Number of Sequences: 438
Number of extensions: 6113
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 37837314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)