Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J22
         (1138 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    62   1e-10
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    38   0.002
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.7  

>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
 Frame = +2

Query: 650 AVLMVSGGRFAGAVFSGG---------TIVLHKTFHSYVTRRGQGQAQATRDXXXXXXXX 802
           A+ MV GG FA  + S            ++  KT H Y TRR QG +Q   D        
Sbjct: 202 AMFMVGGGHFAAMIASNEFNPRDPHVPKVLAQKTIHRYTTRRKQGGSQGAADNTKGNIHS 261

Query: 803 XXXXLRRYNQAQFLEHIQDIVSQWTEXFKGXXLILYRAVGSLNQAAIFGK 952
               LRRYN+   ++ IQ +   W +  +   LI  RA+GS N++  F +
Sbjct: 262 AGSGLRRYNEQALIKDIQQVFKDWGKLLETCDLIFVRAIGSSNRSIFFSQ 311



 Score = 35.1 bits (77), Expect = 0.018
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 269 CSCCGVGPFETRAQQTAHYKHHWHTFNLKRKLFGKSPLSIGQY 397
           C  C +    T  ++ +H K  WH FN KRK+    P+S  ++
Sbjct: 54  CVNCQIDNLHTLDERKSHIKSDWHRFNTKRKITKLPPVSQDEF 96


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 269 CSCCGVGPFETRAQQTAHYKHHWHTFNLKRKLFGKSPLS 385
           C+ C V  F     Q  H+K  WH +NLKRK+    PLS
Sbjct: 7   CTTCTVA-FNNAESQKIHWKSDWHHYNLKRKVASLPPLS 44


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 692 KLPQQICHPRPSGLPIFDSLGSIAAPHVLPRHCHHH-PLI 576
           + PQ I HP  + L    +L  +  P ++P+  H H PL+
Sbjct: 619 RFPQNIHHPSANLLDASAALNPVQNPLLMPQQNHEHSPLV 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,865,216
Number of Sequences: 5004
Number of extensions: 75337
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 605623328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)