Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J22
         (1138 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0871 + 28898262-28898534,28899552-28900015,28900242-289003...    81   1e-15
06_03_1229 + 28571131-28571235,28572108-28572656,28572749-285729...    42   7e-04
01_06_0722 + 31497239-31497357,31497403-31497427,31497747-314978...    33   0.42 
06_03_0745 + 24109406-24109921                                         30   3.9  
08_02_1177 + 24946763-24947275                                         29   9.0  
07_03_1315 - 25722757-25722876,25722972-25723328,25723924-257245...    29   9.0  

>04_04_0871 +
           28898262-28898534,28899552-28900015,28900242-28900356,
           28900510-28901157,28901282-28901374,28901658-28901795,
           28902147-28902206
          Length = 596

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 64/233 (27%), Positives = 97/233 (41%), Gaps = 27/233 (11%)
 Frame = +2

Query: 269 CSCCGVGPFETRAQQTAHYKHHWHTFNLKRKLFGKSPLSIGQYNXXXXXXXXXXXXXXXX 448
           C+ C    FE+  +Q  H+K   H  N+K  + GK+ +     +                
Sbjct: 66  CNTCA-SEFESLQEQREHFKSDLHRLNVKLSIAGKTIIKEDDLDKADPDSLFDDLEVSSV 124

Query: 449 XXXX------PLSDLFAAATR----HCKAFFTNHYGQVFCIYRCILHHKKEEL------- 577
                     P SD   +A        K +F  H G    I+RCIL  + EE        
Sbjct: 125 SGSEDELENGPASDRGLSAKDKGEFRKKLYFRCHSGDTVSIWRCILLKEHEEPVFNSKSG 184

Query: 578 STDGDGSAWVERVEQLL-----IPGYQRWA-----VLMVSGGRFAGAVFSGGTIVLHKTF 727
            T+  GS    + +++L     +    R A     +L+ SGG FAG VF G +++ HKTF
Sbjct: 185 QTESHGSTPFVQEDEMLNRVKNLTSEPRDASRLRIILLTSGGHFAGCVFDGNSVIAHKTF 244

Query: 728 HSYVTRRGQGQAQATRDXXXXXXXXXXXXLRRYNQAQFLEHIQDIVSQWTEXF 886
           H YV R   G+ Q+ +D            LRRYN+A   + IQ++++ W   F
Sbjct: 245 HRYVVRAKAGKRQSGKDATGKVAHSAGSSLRRYNEAALKKEIQELIASWKSYF 297


>06_03_1229 +
           28571131-28571235,28572108-28572656,28572749-28572918,
           28573454-28573669,28573787-28573946
          Length = 399

 Score = 42.3 bits (95), Expect = 7e-04
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 269 CSCCGVGPFETRAQQTAHYKHHWHTFNLKRKLFG 370
           C+ C  G F+   QQ  HY+  WH +NLKRK+ G
Sbjct: 6   CNACNAG-FDDEEQQRLHYRSEWHRYNLKRKVAG 38


>01_06_0722 +
           31497239-31497357,31497403-31497427,31497747-31497896,
           31498249-31498522,31499277-31499464
          Length = 251

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
 Frame = +2

Query: 65  LRRSLALXPEAVKTQIVQVSALAAFQKLLKGVHVAACXLTXSHNVIDXQXVLRRLNALTL 244
           +R  L+        +I+Q S+ AA+QK+L  +    C      +V   + +  R+    +
Sbjct: 1   MRSELSSSSTTWSIEIIQASSFAAYQKMLDRMMSNECATRYIRHVFTKEPLSTRVGCGQV 60

Query: 245 NGASDGNCCSCCGVGP-FETRAQQTAHYKHHWHTFNLKRKLFGKSPLSIG 391
           +   + +   C  V P   T+    +H   H  T   K     ++  SIG
Sbjct: 61  HRIVENDLDKCRVVAPNLPTKTDDLSHSTGHGWTTREKYVAISRTATSIG 110


>06_03_0745 + 24109406-24109921
          Length = 171

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 91  RGSQNSNRASLCARRISKTPQRCSCGSM 174
           +G +  NR S C +R+  T   C CG++
Sbjct: 104 KGREGPNRCSTCRKRVGLTGFNCRCGNL 131


>08_02_1177 + 24946763-24947275
          Length = 170

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 88  ARGSQNSNRASLCARRISKTPQRCSCGSM 174
           A  S + NR   C RR+  T  RC CG +
Sbjct: 102 ASRSSSVNRCHSCRRRVGLTGFRCRCGEL 130


>07_03_1315 -
           25722757-25722876,25722972-25723328,25723924-25724500,
           25724577-25725265,25725487-25725822,25726190-25726527,
           25726619-25726746,25726906-25727030,25727547-25727589,
           25727714-25727802,25728396-25728511,25729157-25729276,
           25729752-25729794
          Length = 1026

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 227 LNALTLNGASDGNCCSCCGVGPFETRAQQTA 319
           L+ALTL  + DGN    CG+G  E  A+ ++
Sbjct: 731 LSALTLKESKDGNVKEICGLGGAEDFAESSS 761


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,182,658
Number of Sequences: 37544
Number of extensions: 552165
Number of successful extensions: 1402
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3444772820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)