Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_J20
(1166 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 120 2e-27
07_03_0571 - 19602755-19603831 55 1e-15
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899 32 1.0
07_03_1525 + 27448257-27448582,27450741-27450973,27451280-274529... 31 2.3
06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312 30 3.1
06_03_1150 + 28022633-28023374,28023501-28023565 30 3.1
07_03_1510 + 27264999-27265371,27265485-27265546,27265768-272664... 30 4.0
07_03_1293 - 25563431-25563545,25564078-25564196,25564300-255644... 29 5.3
07_01_0696 - 5261008-5263128 29 9.3
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 120 bits (290), Expect = 2e-27
Identities = 96/310 (30%), Positives = 161/310 (51%), Gaps = 45/310 (14%)
Frame = +2
Query: 182 AISIRLQSVQXLQQITQSXKLVSAAKXTRAERXLKAARPXGXGAVQ-FYXRAEVTPPEAX 358
A+ R++SV+ +Q+IT++ K+V+A+K + + +R G Q F P
Sbjct: 61 ALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSR----GLWQPFTALLGDVPSVDV 116
Query: 359 PKQLFVAMXSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGXKSRGILQRLYGK 529
K + VA+ SD+GLCG +++ VSK + S P E+ K + +G K + L R
Sbjct: 117 KKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLIRDSKD 175
Query: 530 HIISVANEIGRLPPTF-------------LDASQLATAILTS------------------ 616
+I +E+ + P + + ++L +A+L +
Sbjct: 176 NIEMTVSELQKNPINYTQDKEWHWWWRKVVQLAELVSAVLITLQQKFTDVIAVLADDILK 235
Query: 617 GYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLD----------SDVL 766
E+ + ++++NKF SV+S+ + + + + +E S+ LD S++L
Sbjct: 236 NVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKVGDLDSYEIEGGETKSEIL 295
Query: 767 QSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRXRQAVITRX 946
Q+ TEF + +++ A E ACSE +RM+AMD++S+NAGEM+D+LTLT+NR RQA IT
Sbjct: 296 QNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTE 355
Query: 947 LIXIISGAXA 976
LI IISGA A
Sbjct: 356 LIEIISGASA 365
>07_03_0571 - 19602755-19603831
Length = 358
Score = 54.8 bits (126), Expect(2) = 1e-15
Identities = 29/84 (34%), Positives = 49/84 (58%)
Frame = +2
Query: 725 SKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLT 904
S + ++ +L + L S + AL+E SE ++RM+AM +A+ NA E+ L+
Sbjct: 273 SPVVQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSATDNAIELRKNLS 332
Query: 905 LTFNRXRQAVITRXLIXIISGAXA 976
+ +NR RQA IT ++ I++GA A
Sbjct: 333 MVYNRQRQAKITGEILEIVAGADA 356
Score = 47.2 bits (107), Expect(2) = 1e-15
Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 20/200 (10%)
Frame = +2
Query: 176 LXAISIRLQSVQXLQQITQSXKLVSAAKXTRAERXLKAARPXGXGAVQ--FYXRAEV--- 340
L + R+ SV+ Q+IT++ KLV+AAK RA+ + ++RP V+ + E+
Sbjct: 38 LRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQTE 97
Query: 341 ------TPPEAXPKQLFVAMXSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGXK 496
T K V + +RGLCG+ + V K R+ E ++ V+ VG K
Sbjct: 98 DIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGKK 157
Query: 497 SRGILQRLYGKHIISVAN--EIGRLPPTFLDASQLATAILTSGYEFGSGKI--IYNKFKS 664
R + I E+ + PT D+ + + + K+ +Y+KF S
Sbjct: 158 GNAYFIR---RPFIPTERTLEVNGI-PTVKDSQSICDLVYSLFVSEAVDKVELLYSKFVS 213
Query: 665 VV---SYAQSDLPLYTKKSI 715
+V Q+ LP+ K I
Sbjct: 214 LVRSDPIIQTLLPMSPKGEI 233
>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
Length = 712
Score = 31.9 bits (69), Expect = 1.0
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 576 SWTQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTCP 695
SW++ W +P S Q S+ P+ S I ++ LW R PS P
Sbjct: 306 SWSRAFWAIPASTQSISM-PQESTIPNNLLW-RKPSKDNP 343
>07_03_1525 +
27448257-27448582,27450741-27450973,27451280-27452919,
27453129-27453575
Length = 881
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -2
Query: 757 AVQRVVCRQLAGALNRLLSVEGQVGLGVRY 668
A Q+V+ + AL RL S+EG++G+ +RY
Sbjct: 552 AQQKVLIKLSLQALQRLTSIEGEIGMTLRY 581
>06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312
Length = 270
Score = 30.3 bits (65), Expect = 3.1
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 58 FTFPAPXPSXLQXVGPLRPGCGHPSRGGGFPS 153
F FP P P L P PG PS G GFP+
Sbjct: 101 FRFPFPLP--LPFPAPASPGGAPPSSGSGFPA 130
>06_03_1150 + 28022633-28023374,28023501-28023565
Length = 268
Score = 30.3 bits (65), Expect = 3.1
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 58 FTFPAPXPSXLQXVGPLRPGCGHPSRGGGFPS 153
F FP P P L P PG PS G GFP+
Sbjct: 101 FRFPFPLP--LPFPAPASPGGAPPSSGSGFPA 130
>07_03_1510 +
27264999-27265371,27265485-27265546,27265768-27266436,
27266842-27267288
Length = 516
Score = 29.9 bits (64), Expect = 4.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 757 AVQRVVCRQLAGALNRLLSVEGQVGLGVRY 668
A Q+V+ + L RL S+EG++G+ +RY
Sbjct: 255 AQQKVLLKSSLKVLQRLTSIEGEIGITLRY 284
>07_03_1293 -
25563431-25563545,25564078-25564196,25564300-25564467,
25564565-25564627,25564709-25564816,25565125-25565237,
25565313-25565609,25565724-25565802,25566116-25566224,
25566324-25566365,25567023-25567153,25568100-25568648
Length = 630
Score = 29.5 bits (63), Expect = 5.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 576 SWTQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTCPST-LRSLLRAP 725
+W W PF T + S+S R+P+P+ P+T R LLR P
Sbjct: 41 AWKTKPWASPFFGFSTPSPSPAHHLFSASSPRRSPAPSAPTTPARRLLRLP 91
>07_01_0696 - 5261008-5263128
Length = 706
Score = 28.7 bits (61), Expect = 9.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 746 SLDSDVLQSYTEFSLASLLFYALKEGAC 829
S+D D LQS+ AS LF +L +G+C
Sbjct: 429 SIDEDELQSFVPEFAASNLFVSLPQGSC 456
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,434,359
Number of Sequences: 37544
Number of extensions: 495310
Number of successful extensions: 1415
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3561544780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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